12 items (Oryza punctata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0K1W5	Uncharacterized protein. (389 aa)
	A0A0E0K1W7	Uncharacterized protein. (279 aa)
	A0A0E0K6C4	Uncharacterized protein. (442 aa)
	A0A0E0K7D6	Uncharacterized protein. (404 aa)
	A0A0E0KUV7	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (572 aa)
	A0A0E0KZQ0	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (748 aa)
	A0A0E0L677	Uncharacterized protein. (292 aa)
	A0A0E0L9X2	Alpha-mannosidase. (1173 aa)
	A0A0E0M5E7	Alpha-mannosidase. (1003 aa)
	A0A0E0MBC0	Uncharacterized protein. (544 aa)
	A0A0E0MFW0	Alpha-mannosidase. (1040 aa)
	A0A0E0MII2	Uncharacterized protein. (441 aa)

Your Current Organism:

Oryza punctata

NCBI taxonomy Id: 4537
Other names: O. punctata, Oryza punctata Kotschy ex Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0K1W5	A0A0E0K6C4	Uncharacterized protein.	Uncharacterized protein.	0.938
A0A0E0K1W7	A0A0E0K6C4	Uncharacterized protein.	Uncharacterized protein.	0.805
A0A0E0K6C4	A0A0E0K1W5	Uncharacterized protein.	Uncharacterized protein.	0.938
A0A0E0K6C4	A0A0E0K1W7	Uncharacterized protein.	Uncharacterized protein.	0.805
A0A0E0K6C4	A0A0E0K7D6	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A0E0K6C4	A0A0E0KUV7	Uncharacterized protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.558
A0A0E0K6C4	A0A0E0KZQ0	Uncharacterized protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.465
A0A0E0K6C4	A0A0E0L9X2	Uncharacterized protein.	Alpha-mannosidase.	0.973
A0A0E0K6C4	A0A0E0MBC0	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A0E0K6C4	A0A0E0MII2	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A0E0K7D6	A0A0E0K6C4	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A0E0K7D6	A0A0E0KUV7	Uncharacterized protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.908
A0A0E0K7D6	A0A0E0KZQ0	Uncharacterized protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.879
A0A0E0K7D6	A0A0E0L677	Uncharacterized protein.	Uncharacterized protein.	0.626
A0A0E0K7D6	A0A0E0L9X2	Uncharacterized protein.	Alpha-mannosidase.	0.904
A0A0E0K7D6	A0A0E0M5E7	Uncharacterized protein.	Alpha-mannosidase.	0.661
A0A0E0K7D6	A0A0E0MFW0	Uncharacterized protein.	Alpha-mannosidase.	0.626
A0A0E0KUV7	A0A0E0K6C4	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	Uncharacterized protein.	0.558
A0A0E0KUV7	A0A0E0K7D6	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	Uncharacterized protein.	0.908
A0A0E0KUV7	A0A0E0KZQ0	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.970