36 items (Oryza punctata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0L995	Uncharacterized protein. (569 aa)
	A0A0E0MNV3	Exostosin domain-containing protein; Belongs to the glycosyltransferase 47 family. (535 aa)
	A0A0E0MKT1	Exostosin domain-containing protein; Belongs to the glycosyltransferase 47 family. (517 aa)
	A0A0E0MK64	Uncharacterized protein. (421 aa)
	A0A0E0M211	Uncharacterized protein. (558 aa)
	A0A0E0LX42	Epimerase domain-containing protein. (480 aa)
	A0A0E0LVV1	Uncharacterized protein. (505 aa)
	A0A0E0LTX5	Uncharacterized protein. (596 aa)
	A0A0E0LQX0	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (392 aa)
	A0A0E0LPP6	NAD(P)-bd_dom domain-containing protein. (450 aa)
	A0A0E0LGZ9	Epimerase domain-containing protein. (489 aa)
	A0A0E0L997	Uncharacterized protein. (284 aa)
	A0A0E0L992	Uncharacterized protein. (587 aa)
	A0A0E0L991	Uncharacterized protein. (551 aa)
	A0A0E0L989	Uncharacterized protein. (264 aa)
	A0A0E0L985	Uncharacterized protein. (1932 aa)
	A0A0E0L984	Uncharacterized protein. (564 aa)
	A0A0E0L8S8	NAD(P)-bd_dom domain-containing protein. (449 aa)
	A0A0E0L1K1	Uncharacterized protein. (461 aa)
	A0A0E0KV98	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (399 aa)
	A0A0E0KR83	Uncharacterized protein. (574 aa)
	A0A0E0KR81	Uncharacterized protein. (576 aa)
	A0A0E0KQT7	Uncharacterized protein. (452 aa)
	A0A0E0KIX4	GOLD domain-containing protein. (294 aa)
	A0A0E0KD86	GOLD domain-containing protein. (228 aa)
	A0A0E0KC39	NAD(P)-bd_dom domain-containing protein. (359 aa)
	A0A0E0KBB1	Epimerase domain-containing protein. (476 aa)
	A0A0E0K651	NAD(P)-bd_dom domain-containing protein. (437 aa)
	A0A0E0K5J8	Uncharacterized protein. (1676 aa)
	A0A0E0JYE9	Uncharacterized protein. (635 aa)
	A0A0E0JHR5	Uncharacterized protein. (404 aa)
	A0A0E0M8D2	Exostosin domain-containing protein; Belongs to the glycosyltransferase 47 family. (632 aa)
	A0A0E0K5L6	Uncharacterized protein. (570 aa)
	A0A0E0M8D1	Exostosin domain-containing protein; Belongs to the glycosyltransferase 47 family. (610 aa)
	A0A0E0M319	Epimerase domain-containing protein. (487 aa)
	A0A0E0K5L4	Uncharacterized protein. (604 aa)

Your Current Organism:

Oryza punctata

NCBI taxonomy Id: 4537
Other names: O. punctata, Oryza punctata Kotschy ex Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0JHR5	A0A0E0K651	Uncharacterized protein.	NAD(P)-bd_dom domain-containing protein.	0.842
A0A0E0JHR5	A0A0E0KBB1	Uncharacterized protein.	Epimerase domain-containing protein.	0.842
A0A0E0JHR5	A0A0E0KV98	Uncharacterized protein.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.876
A0A0E0JHR5	A0A0E0L8S8	Uncharacterized protein.	NAD(P)-bd_dom domain-containing protein.	0.842
A0A0E0JHR5	A0A0E0LGZ9	Uncharacterized protein.	Epimerase domain-containing protein.	0.876
A0A0E0JHR5	A0A0E0LQX0	Uncharacterized protein.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.876
A0A0E0JHR5	A0A0E0LX42	Uncharacterized protein.	Epimerase domain-containing protein.	0.842
A0A0E0JHR5	A0A0E0M319	Uncharacterized protein.	Epimerase domain-containing protein.	0.842
A0A0E0K651	A0A0E0JHR5	NAD(P)-bd_dom domain-containing protein.	Uncharacterized protein.	0.842
A0A0E0K651	A0A0E0KBB1	NAD(P)-bd_dom domain-containing protein.	Epimerase domain-containing protein.	0.714
A0A0E0K651	A0A0E0KC39	NAD(P)-bd_dom domain-containing protein.	NAD(P)-bd_dom domain-containing protein.	0.874
A0A0E0K651	A0A0E0L1K1	NAD(P)-bd_dom domain-containing protein.	Uncharacterized protein.	0.670
A0A0E0K651	A0A0E0LPP6	NAD(P)-bd_dom domain-containing protein.	NAD(P)-bd_dom domain-containing protein.	0.670
A0A0E0KBB1	A0A0E0JHR5	Epimerase domain-containing protein.	Uncharacterized protein.	0.842
A0A0E0KBB1	A0A0E0K651	Epimerase domain-containing protein.	NAD(P)-bd_dom domain-containing protein.	0.714
A0A0E0KBB1	A0A0E0KC39	Epimerase domain-containing protein.	NAD(P)-bd_dom domain-containing protein.	0.882
A0A0E0KBB1	A0A0E0L1K1	Epimerase domain-containing protein.	Uncharacterized protein.	0.836
A0A0E0KBB1	A0A0E0L8S8	Epimerase domain-containing protein.	NAD(P)-bd_dom domain-containing protein.	0.715
A0A0E0KBB1	A0A0E0LPP6	Epimerase domain-containing protein.	NAD(P)-bd_dom domain-containing protein.	0.836
A0A0E0KC39	A0A0E0K651	NAD(P)-bd_dom domain-containing protein.	NAD(P)-bd_dom domain-containing protein.	0.874