(11 nodes) RNA polymerase II preinitiation complex assembly network (Oryza punctata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0KEX7	Uncharacterized protein. (226 aa)
	A0A0E0KG67	BTP domain-containing protein. (383 aa)
	A0A0E0L180	Uncharacterized protein. (95 aa)
	A0A0E0LDZ0	Uncharacterized protein. (1797 aa)
	A0A0E0LN82	Uncharacterized protein. (408 aa)
	A0A0E0MNW6	BTP domain-containing protein. (366 aa)
	A0A0E0JRA1	Uncharacterized protein. (582 aa)
	A0A0E0JQZ7	TFIID_20kDa domain-containing protein. (551 aa)
	A0A0E0JMF8	TAFII28 domain-containing protein. (272 aa)
	A0A0E0JLS3	TAFII55_N domain-containing protein. (172 aa)
	A0A0E0JJF7	TAF domain-containing protein. (542 aa)

Your Current Organism:

Oryza punctata

NCBI taxonomy Id: 4537
Other names: O. punctata, Oryza punctata Kotschy ex Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0JJF7	A0A0E0JLS3	TAF domain-containing protein.	TAFII55_N domain-containing protein.	0.991
A0A0E0JJF7	A0A0E0JMF8	TAF domain-containing protein.	TAFII28 domain-containing protein.	0.999
A0A0E0JJF7	A0A0E0JQZ7	TAF domain-containing protein.	TFIID_20kDa domain-containing protein.	0.992
A0A0E0JJF7	A0A0E0JRA1	TAF domain-containing protein.	Uncharacterized protein.	0.992
A0A0E0JJF7	A0A0E0KEX7	TAF domain-containing protein.	Uncharacterized protein.	0.987
A0A0E0JJF7	A0A0E0KG67	TAF domain-containing protein.	BTP domain-containing protein.	0.991
A0A0E0JJF7	A0A0E0L180	TAF domain-containing protein.	Uncharacterized protein.	0.991
A0A0E0JJF7	A0A0E0LDZ0	TAF domain-containing protein.	Uncharacterized protein.	0.999
A0A0E0JJF7	A0A0E0LN82	TAF domain-containing protein.	Uncharacterized protein.	0.987
A0A0E0JJF7	A0A0E0MNW6	TAF domain-containing protein.	BTP domain-containing protein.	0.991
A0A0E0JLS3	A0A0E0JJF7	TAFII55_N domain-containing protein.	TAF domain-containing protein.	0.991
A0A0E0JLS3	A0A0E0JMF8	TAFII55_N domain-containing protein.	TAFII28 domain-containing protein.	0.991
A0A0E0JLS3	A0A0E0JQZ7	TAFII55_N domain-containing protein.	TFIID_20kDa domain-containing protein.	0.980
A0A0E0JLS3	A0A0E0JRA1	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.980
A0A0E0JLS3	A0A0E0KEX7	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.966
A0A0E0JLS3	A0A0E0KG67	TAFII55_N domain-containing protein.	BTP domain-containing protein.	0.965
A0A0E0JLS3	A0A0E0LDZ0	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.991
A0A0E0JLS3	A0A0E0LN82	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.966
A0A0E0JLS3	A0A0E0MNW6	TAFII55_N domain-containing protein.	BTP domain-containing protein.	0.965
A0A0E0JMF8	A0A0E0JJF7	TAFII28 domain-containing protein.	TAF domain-containing protein.	0.999