41 items (Oryza punctata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0KVQ8	Hexosyltransferase; Belongs to the glycosyltransferase 8 family. (556 aa)
	A0A0E0MAD1	Uncharacterized protein. (981 aa)
	A0A0E0M997	Fe2OG dioxygenase domain-containing protein. (323 aa)
	A0A0E0M464	Uncharacterized protein. (570 aa)
	A0A0E0M3R2	Uncharacterized protein; Belongs to the cytochrome P450 family. (509 aa)
	A0A0E0M2K0	Uncharacterized protein. (713 aa)
	A0A0E0M148	Uncharacterized protein. (512 aa)
	A0A0E0LY43	Uncharacterized protein. (450 aa)
	A0A0E0LXU2	WD_REPEATS_REGION domain-containing protein. (772 aa)
	A0A0E0LWE7	Hexosyltransferase; Belongs to the glycosyltransferase 8 family. (690 aa)
	A0A0E0LTT7	Hexosyltransferase; Belongs to the glycosyltransferase 8 family. (652 aa)
	A0A0E0LMM1	t-SNARE coiled-coil homology domain-containing protein. (121 aa)
	A0A0E0JFW1	Uncharacterized protein. (1095 aa)
	A0A0E0JFW0	Uncharacterized protein; Belongs to the cytochrome P450 family. (287 aa)
	A0A0E0JFV7	Uncharacterized protein; Belongs to the cytochrome P450 family. (544 aa)
	A0A0E0LEW6	Uncharacterized protein. (602 aa)
	A0A0E0LCF4	Uncharacterized protein. (603 aa)
	A0A0E0L9X2	Alpha-mannosidase. (1173 aa)
	A0A0E0L9U7	Uncharacterized protein. (595 aa)
	A0A0E0L4M9	Uncharacterized protein; Belongs to the cytochrome P450 family. (534 aa)
	A0A0E0L427	Uncharacterized protein. (314 aa)
	A0A0E0L3P5	Methyltransferase. (621 aa)
	A0A0E0KUV7	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (572 aa)
	A0A0E0KTX5	Uncharacterized protein. (587 aa)
	A0A0E0KTL8	Uncharacterized protein. (569 aa)
	A0A0E0KP82	P4Hc domain-containing protein. (247 aa)
	A0A0E0KKZ1	Uncharacterized protein. (541 aa)
	A0A0E0KKY1	Uncharacterized protein. (911 aa)
	A0A0E0KIC8	Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling. (206 aa)
	A0A0E0KI27	Uncharacterized protein. (148 aa)
	A0A0E0KF08	Hexosyltransferase; Belongs to the glycosyltransferase 8 family. (612 aa)
	A0A0E0KEQ6	Metallophos domain-containing protein. (502 aa)
	A0A0E0K9U8	t-SNARE coiled-coil homology domain-containing protein. (124 aa)
	A0A0E0K2Z6	Glutaredoxin domain-containing protein. (133 aa)
	A0A0E0K0R9	Uncharacterized protein. (727 aa)
	A0A0E0JQI9	Methyltransferase. (681 aa)
	A0A0E0JLB6	Glycos_transf_1 domain-containing protein. (1074 aa)
	A0A0E0MN47	Uncharacterized protein. (504 aa)
	A0A0E0MHM2	Uncharacterized protein. (537 aa)
	A0A0E0MG72	Uncharacterized protein. (507 aa)
	A0A0E0MD07	Uncharacterized protein; Belongs to the cytochrome P450 family. (537 aa)

Your Current Organism:

Oryza punctata

NCBI taxonomy Id: 4537
Other names: O. punctata, Oryza punctata Kotschy ex Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0JFW0	A0A0E0LCF4	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.400
A0A0E0K9U8	A0A0E0LMM1	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.874
A0A0E0KUV7	A0A0E0L9X2	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	Alpha-mannosidase.	0.579
A0A0E0KVQ8	A0A0E0M148	Hexosyltransferase; Belongs to the glycosyltransferase 8 family.	Uncharacterized protein.	0.403
A0A0E0L9X2	A0A0E0KUV7	Alpha-mannosidase.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.579
A0A0E0LCF4	A0A0E0JFW0	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.400
A0A0E0LMM1	A0A0E0K9U8	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.874
A0A0E0M148	A0A0E0KVQ8	Uncharacterized protein.	Hexosyltransferase; Belongs to the glycosyltransferase 8 family.	0.403
A0A0E0M148	A0A0E0M2K0	Uncharacterized protein.	Uncharacterized protein.	0.403
A0A0E0M2K0	A0A0E0M148	Uncharacterized protein.	Uncharacterized protein.	0.403