(62 nodes) RNA polymerase II, holoenzyme network (Oryza punctata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0JDA0	Uncharacterized protein. (168 aa)
	A0A0E0JLS3	TAFII55_N domain-containing protein. (172 aa)
	A0A0E0JMF8	TAFII28 domain-containing protein. (272 aa)
	A0A0E0JMQ2	Uncharacterized protein. (766 aa)
	A0A0E0JP98	TFIIF_beta domain-containing protein. (256 aa)
	A0A0E0JPD8	Plus3 domain-containing protein. (896 aa)
	A0A0E0JPZ3	Uncharacterized protein. (210 aa)
	A0A0E0JQZ7	TFIID_20kDa domain-containing protein. (551 aa)
	A0A0E0JRA1	Uncharacterized protein. (582 aa)
	A0A0E0JUN9	RPOL4c domain-containing protein. (142 aa)
	A0A0E0JUZ1	Uncharacterized protein. (264 aa)
	A0A0E0JYW1	Protein kinase domain-containing protein. (669 aa)
	A0A0E0K335	Uncharacterized protein. (803 aa)
	A0A0E0K7S7	Uncharacterized protein. (1792 aa)
	A0A0E0K9H0	TFIIE beta domain-containing protein. (303 aa)
	A0A0E0KBC4	Uncharacterized protein. (809 aa)
	A0A0E0KFG1	Uncharacterized protein. (812 aa)
	A0A0E0KGT9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1092 aa)
	A0A0E0KH48	Uncharacterized protein. (434 aa)
	A0A0E0KIT0	CYCLIN domain-containing protein; Belongs to the cyclin family. (328 aa)
	A0A0E0KJ72	Uncharacterized protein. (621 aa)
	A0A0E0KQW7	Uncharacterized protein. (261 aa)
	A0A0E0KSM8	General transcription factor IIH subunit. (432 aa)
	A0A0E0KWW5	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (458 aa)
	A0A0E0KXK7	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)
	A0A0E0KYK6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1855 aa)
	A0A0E0L0M7	Uncharacterized protein. (394 aa)
	A0A0E0L180	Uncharacterized protein. (95 aa)
	A0A0E0L246	Protein kinase domain-containing protein. (547 aa)
	A0A0E0L2A4	Uncharacterized protein. (177 aa)
	A0A0E0L4I2	TFIIF_beta domain-containing protein. (245 aa)
	A0A0E0L8F5	MAT1 domain-containing protein. (195 aa)
	A0A0E0LDZ0	Uncharacterized protein. (1797 aa)
	A0A0E0LE17	WD_REPEATS_REGION domain-containing protein. (630 aa)
	A0A0E0LG76	Uncharacterized protein. (492 aa)
	A0A0E0LHM9	RNA_pol_L_2 domain-containing protein. (120 aa)
	A0A0E0LIB6	WD_REPEATS_REGION domain-containing protein. (604 aa)
	A0A0E0LKH0	Uncharacterized protein. (1019 aa)
	A0A0E0LMI0	Uncharacterized protein. (70 aa)
	A0A0E0LNB2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (116 aa)
	A0A0E0LRD6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1807 aa)
	A0A0E0LRE9	Uncharacterized protein. (545 aa)
	A0A0E0LSR0	Uncharacterized protein. (134 aa)
	A0A0E0LTZ2	Uncharacterized protein. (544 aa)
	A0A0E0LU12	HTH TFE/IIEalpha-type domain-containing protein. (462 aa)
	A0A0E0M134	Uncharacterized protein. (1451 aa)
	A0A0E0M1D4	PPR_long domain-containing protein. (962 aa)
	A0A0E0M3R4	Uncharacterized protein. (1821 aa)
	A0A0E0M650	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (530 aa)
	A0A0E0M7D6	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (279 aa)
	A0A0E0M9M6	Uncharacterized protein. (1800 aa)
	A0A0E0MC03	CID domain-containing protein. (596 aa)
	A0A0E0MFE2	MAT1 domain-containing protein. (196 aa)
	A0A0E0MHW3	WD_REPEATS_REGION domain-containing protein. (322 aa)
	A0A0E0MI49	Uncharacterized protein. (126 aa)
	A0A0E0MIR3	RNA_pol_Rpb1_5 domain-containing protein. (194 aa)
	A0A0E0MIR4	ULP_PROTEASE domain-containing protein. (713 aa)
	A0A0E0MJ63	CID domain-containing protein. (591 aa)
	A0A0E0MJD1	TFIIE domain-containing protein. (234 aa)
	A0A0E0MN68	Plus3 domain-containing protein. (642 aa)
	A0A0E0MNJ0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
	A0A0E0MP03	Uncharacterized protein. (615 aa)

Your Current Organism:

Oryza punctata

NCBI taxonomy Id: 4537
Other names: O. punctata, Oryza punctata Kotschy ex Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0JDA0	A0A0E0JLS3	Uncharacterized protein.	TAFII55_N domain-containing protein.	0.619
A0A0E0JDA0	A0A0E0JMF8	Uncharacterized protein.	TAFII28 domain-containing protein.	0.676
A0A0E0JDA0	A0A0E0JMQ2	Uncharacterized protein.	Uncharacterized protein.	0.695
A0A0E0JDA0	A0A0E0JP98	Uncharacterized protein.	TFIIF_beta domain-containing protein.	0.783
A0A0E0JDA0	A0A0E0JPZ3	Uncharacterized protein.	Uncharacterized protein.	0.759
A0A0E0JDA0	A0A0E0JQZ7	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.641
A0A0E0JDA0	A0A0E0JRA1	Uncharacterized protein.	Uncharacterized protein.	0.641
A0A0E0JDA0	A0A0E0JUN9	Uncharacterized protein.	RPOL4c domain-containing protein.	0.890
A0A0E0JDA0	A0A0E0JUZ1	Uncharacterized protein.	Uncharacterized protein.	0.793
A0A0E0JDA0	A0A0E0JYW1	Uncharacterized protein.	Protein kinase domain-containing protein.	0.463
A0A0E0JDA0	A0A0E0K335	Uncharacterized protein.	Uncharacterized protein.	0.636
A0A0E0JDA0	A0A0E0K9H0	Uncharacterized protein.	TFIIE beta domain-containing protein.	0.758
A0A0E0JDA0	A0A0E0KBC4	Uncharacterized protein.	Uncharacterized protein.	0.770
A0A0E0JDA0	A0A0E0KFG1	Uncharacterized protein.	Uncharacterized protein.	0.636
A0A0E0JDA0	A0A0E0KGT9	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.832
A0A0E0JDA0	A0A0E0KH48	Uncharacterized protein.	Uncharacterized protein.	0.727
A0A0E0JDA0	A0A0E0KIT0	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.723
A0A0E0JDA0	A0A0E0KJ72	Uncharacterized protein.	Uncharacterized protein.	0.538
A0A0E0JDA0	A0A0E0KSM8	Uncharacterized protein.	General transcription factor IIH subunit.	0.797
A0A0E0JDA0	A0A0E0KWW5	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.789