(5 nodes) Enolase network (Oryza punctata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0L7H7	Uncharacterized protein. (446 aa)
	A0A0E0KBA4	Uncharacterized protein. (425 aa)
	A0A0E0KBP9	Uncharacterized protein. (399 aa)
	A0A0E0M0K9	Uncharacterized protein. (474 aa)
	A0A0E0M5T9	Uncharacterized protein. (445 aa)

Your Current Organism:

Oryza punctata

NCBI taxonomy Id: 4537
Other names: O. punctata, Oryza punctata Kotschy ex Steud.

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0KBA4	A0A0E0KBP9	Uncharacterized protein.	Uncharacterized protein.	0.898
A0A0E0KBA4	A0A0E0M0K9	Uncharacterized protein.	Uncharacterized protein.	0.893
A0A0E0KBP9	A0A0E0KBA4	Uncharacterized protein.	Uncharacterized protein.	0.898
A0A0E0KBP9	A0A0E0L7H7	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A0E0KBP9	A0A0E0M0K9	Uncharacterized protein.	Uncharacterized protein.	0.918
A0A0E0KBP9	A0A0E0M5T9	Uncharacterized protein.	Uncharacterized protein.	0.898
A0A0E0L7H7	A0A0E0KBP9	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A0E0L7H7	A0A0E0M0K9	Uncharacterized protein.	Uncharacterized protein.	0.893
A0A0E0M0K9	A0A0E0KBA4	Uncharacterized protein.	Uncharacterized protein.	0.893
A0A0E0M0K9	A0A0E0KBP9	Uncharacterized protein.	Uncharacterized protein.	0.918
A0A0E0M0K9	A0A0E0L7H7	Uncharacterized protein.	Uncharacterized protein.	0.893
A0A0E0M0K9	A0A0E0M5T9	Uncharacterized protein.	Uncharacterized protein.	0.895
A0A0E0M5T9	A0A0E0KBP9	Uncharacterized protein.	Uncharacterized protein.	0.898
A0A0E0M5T9	A0A0E0M0K9	Uncharacterized protein.	Uncharacterized protein.	0.895