17 items (Oryza punctata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0JGG8	Uncharacterized protein. (291 aa)
	A0A0E0K276	Uncharacterized protein. (324 aa)
	A0A0E0K436	Uncharacterized protein. (211 aa)
	A0A0E0KWU7	Uncharacterized protein. (99 aa)
	A0A0E0KWU8	Uncharacterized protein. (183 aa)
	A0A0E0KXW7	Uncharacterized protein. (194 aa)
	A0A0E0L2Y3	Uncharacterized protein. (742 aa)
	A0A0E0L2Y5	Uncharacterized protein. (583 aa)
	A0A0E0L2Y7	Uncharacterized protein. (194 aa)
	A0A0E0L2Y9	Uncharacterized protein. (231 aa)
	A0A0E0L3K4	Uncharacterized protein. (192 aa)
	A0A0E0L712	Uncharacterized protein. (205 aa)
	A0A0E0LK92	Uncharacterized protein. (176 aa)
	A0A0E0LSZ8	Uncharacterized protein. (199 aa)
	A0A0E0LZ96	Uncharacterized protein. (181 aa)
	A0A0E0M981	Uncharacterized protein. (183 aa)
	A0A0E0ML03	Uncharacterized protein. (187 aa)

Your Current Organism:

Oryza punctata

NCBI taxonomy Id: 4537
Other names: O. punctata, Oryza punctata Kotschy ex Steud.

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0KWU7	A0A0E0KXW7	Uncharacterized protein.	Uncharacterized protein.	0.415
A0A0E0KWU7	A0A0E0L2Y7	Uncharacterized protein.	Uncharacterized protein.	0.459
A0A0E0KWU7	A0A0E0L3K4	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A0E0KWU8	A0A0E0KXW7	Uncharacterized protein.	Uncharacterized protein.	0.417
A0A0E0KWU8	A0A0E0L2Y7	Uncharacterized protein.	Uncharacterized protein.	0.473
A0A0E0KWU8	A0A0E0L3K4	Uncharacterized protein.	Uncharacterized protein.	0.412
A0A0E0KXW7	A0A0E0KWU7	Uncharacterized protein.	Uncharacterized protein.	0.415
A0A0E0KXW7	A0A0E0KWU8	Uncharacterized protein.	Uncharacterized protein.	0.417
A0A0E0KXW7	A0A0E0L2Y7	Uncharacterized protein.	Uncharacterized protein.	0.431
A0A0E0KXW7	A0A0E0LK92	Uncharacterized protein.	Uncharacterized protein.	0.427
A0A0E0KXW7	A0A0E0LSZ8	Uncharacterized protein.	Uncharacterized protein.	0.429
A0A0E0L2Y7	A0A0E0KWU7	Uncharacterized protein.	Uncharacterized protein.	0.459
A0A0E0L2Y7	A0A0E0KWU8	Uncharacterized protein.	Uncharacterized protein.	0.473
A0A0E0L2Y7	A0A0E0KXW7	Uncharacterized protein.	Uncharacterized protein.	0.431
A0A0E0L2Y7	A0A0E0LK92	Uncharacterized protein.	Uncharacterized protein.	0.459
A0A0E0L3K4	A0A0E0KWU7	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A0E0L3K4	A0A0E0KWU8	Uncharacterized protein.	Uncharacterized protein.	0.412
A0A0E0L3K4	A0A0E0LK92	Uncharacterized protein.	Uncharacterized protein.	0.438
A0A0E0L3K4	A0A0E0LZ96	Uncharacterized protein.	Uncharacterized protein.	0.422
A0A0E0L3K4	A0A0E0M981	Uncharacterized protein.	Uncharacterized protein.	0.462