21 items (Oryza glaberrima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G2XLD3_ORYGL	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (320 aa)
	I1NK33_ORYGL	KOW domain-containing protein. (157 aa)
	I1NMW6_ORYGL	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (152 aa)
	I1NSL8_ORYGL	Ribosomal_L7Ae domain-containing protein. (105 aa)
	I1NWC2_ORYGL	Uncharacterized protein. (192 aa)
	I1NZG3_ORYGL	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (137 aa)
	I1P3M7_ORYGL	Uncharacterized protein. (123 aa)
	I1P567_ORYGL	Uncharacterized protein. (51 aa)
	I1P7F4_ORYGL	Uncharacterized protein. (164 aa)
	I1PM65_ORYGL	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (222 aa)
	I1PPC6_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (166 aa)
	I1PUR6_ORYGL	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (60 aa)
	I1PWC1_ORYGL	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (113 aa)
	I1PWS0_ORYGL	TRASH domain-containing protein. (161 aa)
	I1PXT9_ORYGL	Uncharacterized protein. (111 aa)
	I1PXU0_ORYGL	Uncharacterized protein. (92 aa)
	I1QD28_ORYGL	Uncharacterized protein. (127 aa)
	I1QD52_ORYGL	Uncharacterized protein. (130 aa)
	I1QF51_ORYGL	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (110 aa)
	I1QME6_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (171 aa)
	I1QQ66_ORYGL	Uncharacterized protein. (133 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G2XLD3_ORYGL	I1NK33_ORYGL	G2XLD3	I1NK33	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	KOW domain-containing protein.	0.995
G2XLD3_ORYGL	I1NMW6_ORYGL	G2XLD3	I1NMW6	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.996
G2XLD3_ORYGL	I1NSL8_ORYGL	G2XLD3	I1NSL8	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Ribosomal_L7Ae domain-containing protein.	0.995
G2XLD3_ORYGL	I1NWC2_ORYGL	G2XLD3	I1NWC2	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.996
G2XLD3_ORYGL	I1NZG3_ORYGL	G2XLD3	I1NZG3	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.995
G2XLD3_ORYGL	I1P3M7_ORYGL	G2XLD3	I1P3M7	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.996
G2XLD3_ORYGL	I1P567_ORYGL	G2XLD3	I1P567	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.998
G2XLD3_ORYGL	I1P7F4_ORYGL	G2XLD3	I1P7F4	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.994
G2XLD3_ORYGL	I1PM65_ORYGL	G2XLD3	I1PM65	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.994
G2XLD3_ORYGL	I1PPC6_ORYGL	G2XLD3	I1PPC6	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.991
G2XLD3_ORYGL	I1PUR6_ORYGL	G2XLD3	I1PUR6	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.998
G2XLD3_ORYGL	I1PWC1_ORYGL	G2XLD3	I1PWC1	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.996
G2XLD3_ORYGL	I1PWS0_ORYGL	G2XLD3	I1PWS0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	TRASH domain-containing protein.	0.994
G2XLD3_ORYGL	I1PXT9_ORYGL	G2XLD3	I1PXT9	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.998
G2XLD3_ORYGL	I1PXU0_ORYGL	G2XLD3	I1PXU0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.996
G2XLD3_ORYGL	I1QD28_ORYGL	G2XLD3	I1QD28	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.995
G2XLD3_ORYGL	I1QD52_ORYGL	G2XLD3	I1QD52	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.993
G2XLD3_ORYGL	I1QF51_ORYGL	G2XLD3	I1QF51	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.999
G2XLD3_ORYGL	I1QME6_ORYGL	G2XLD3	I1QME6	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.996
G2XLD3_ORYGL	I1QQ66_ORYGL	G2XLD3	I1QQ66	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.996