STRINGSTRING
I1NM37_ORYGL I1NM37_ORYGL I1NVK3_ORYGL I1NVK3_ORYGL I1NWB3_ORYGL I1NWB3_ORYGL I1NWE7_ORYGL I1NWE7_ORYGL I1NWU5_ORYGL I1NWU5_ORYGL I1NX82_ORYGL I1NX82_ORYGL I1NXT4_ORYGL I1NXT4_ORYGL I1NYT7_ORYGL I1NYT7_ORYGL I1NYX8_ORYGL I1NYX8_ORYGL I1NZ82_ORYGL I1NZ82_ORYGL I1P0N9_ORYGL I1P0N9_ORYGL I1P2H3_ORYGL I1P2H3_ORYGL I1P5S0_ORYGL I1P5S0_ORYGL I1P9C0_ORYGL I1P9C0_ORYGL I1P9R6_ORYGL I1P9R6_ORYGL I1PAG1_ORYGL I1PAG1_ORYGL I1PAX7_ORYGL I1PAX7_ORYGL I1PBD3_ORYGL I1PBD3_ORYGL I1PC76_ORYGL I1PC76_ORYGL I1PGM8_ORYGL I1PGM8_ORYGL I1PIC0_ORYGL I1PIC0_ORYGL I1PM45_ORYGL I1PM45_ORYGL I1PNQ5_ORYGL I1PNQ5_ORYGL I1PUA5_ORYGL I1PUA5_ORYGL I1PVU7_ORYGL I1PVU7_ORYGL I1PZV3_ORYGL I1PZV3_ORYGL I1Q3J1_ORYGL I1Q3J1_ORYGL I1Q8C3_ORYGL I1Q8C3_ORYGL I1Q8X6_ORYGL I1Q8X6_ORYGL I1QC32_ORYGL I1QC32_ORYGL I1QEZ2_ORYGL I1QEZ2_ORYGL I1QFN9_ORYGL I1QFN9_ORYGL I1QFV4_ORYGL I1QFV4_ORYGL I1QJ30_ORYGL I1QJ30_ORYGL I1QMA5_ORYGL I1QMA5_ORYGL I1QNL6_ORYGL I1QNL6_ORYGL I1QZH3_ORYGL I1QZH3_ORYGL I1R1W3_ORYGL I1R1W3_ORYGL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
I1NM37_ORYGLUncharacterized protein. (804 aa)
I1NVK3_ORYGLSmall nuclear ribonucleoprotein Sm D2. (107 aa)
I1NWB3_ORYGLSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
I1NWE7_ORYGLUncharacterized protein. (2177 aa)
I1NWU5_ORYGLSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
I1NX82_ORYGLTOG domain-containing protein. (1283 aa)
I1NXT4_ORYGLSm domain-containing protein. (86 aa)
I1NYT7_ORYGLUncharacterized protein. (284 aa)
I1NYX8_ORYGLUncharacterized protein. (792 aa)
I1NZ82_ORYGLU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (228 aa)
I1P0N9_ORYGLUncharacterized protein. (802 aa)
I1P2H3_ORYGLSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
I1P5S0_ORYGLPSP domain-containing protein. (582 aa)
I1P9C0_ORYGLSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
I1P9R6_ORYGLMatrin-type domain-containing protein. (352 aa)
I1PAG1_ORYGLUncharacterized protein. (232 aa)
I1PAX7_ORYGLUncharacterized protein. (467 aa)
I1PBD3_ORYGLWD_REPEATS_REGION domain-containing protein. (520 aa)
I1PC76_ORYGLSmall nuclear ribonucleoprotein G. (80 aa)
I1PGM8_ORYGLRRM domain-containing protein. (130 aa)
I1PIC0_ORYGLMatrin-type domain-containing protein. (507 aa)
I1PM45_ORYGLSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
I1PNQ5_ORYGLNop domain-containing protein. (484 aa)
I1PUA5_ORYGLSmall nuclear ribonucleoprotein Sm D2. (106 aa)
I1PVU7_ORYGLRRM domain-containing protein. (187 aa)
I1PZV3_ORYGLMPN domain-containing protein. (2350 aa)
I1Q3J1_ORYGLTr-type G domain-containing protein. (997 aa)
I1Q8C3_ORYGLSmall nuclear ribonucleoprotein-associated protein. (261 aa)
I1Q8X6_ORYGLCPSF_A domain-containing protein. (988 aa)
I1QC32_ORYGLSmall nuclear ribonucleoprotein G. (80 aa)
I1QEZ2_ORYGLUncharacterized protein. (110 aa)
I1QFN9_ORYGLSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
I1QFV4_ORYGLUncharacterized protein. (1053 aa)
I1QJ30_ORYGLSplicing factor subunit; Belongs to the SF3B5 family. (87 aa)
I1QMA5_ORYGLUncharacterized protein. (609 aa)
I1QNL6_ORYGLUncharacterized protein. (580 aa)
I1QZH3_ORYGLUncharacterized protein. (152 aa)
I1R1W3_ORYGLSm domain-containing protein. (86 aa)
Your Current Organism:
Oryza glaberrima
NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.