(11 nodes) Spliceosomal tri-snRNP complex network (Oryza glaberrima)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1NM37_ORYGL	Uncharacterized protein. (804 aa)
	I1NVK3_ORYGL	Small nuclear ribonucleoprotein Sm D2. (107 aa)
	I1P0N9_ORYGL	Uncharacterized protein. (802 aa)
	I1P2H3_ORYGL	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
	I1P9C0_ORYGL	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
	I1PBD3_ORYGL	WD_REPEATS_REGION domain-containing protein. (520 aa)
	I1PC76_ORYGL	Small nuclear ribonucleoprotein G. (80 aa)
	I1Q3J1_ORYGL	Tr-type G domain-containing protein. (997 aa)
	I1QFN9_ORYGL	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	I1QMA5_ORYGL	Uncharacterized protein. (609 aa)
	I1R1W3_ORYGL	Sm domain-containing protein. (86 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NM37_ORYGL	I1NVK3_ORYGL	I1NM37	I1NVK3	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.986
I1NM37_ORYGL	I1P0N9_ORYGL	I1NM37	I1P0N9	Uncharacterized protein.	Uncharacterized protein.	0.997
I1NM37_ORYGL	I1P2H3_ORYGL	I1NM37	I1P2H3	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.985
I1NM37_ORYGL	I1P9C0_ORYGL	I1NM37	I1P9C0	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.991
I1NM37_ORYGL	I1PBD3_ORYGL	I1NM37	I1PBD3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.994
I1NM37_ORYGL	I1PC76_ORYGL	I1NM37	I1PC76	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.985
I1NM37_ORYGL	I1Q3J1_ORYGL	I1NM37	I1Q3J1	Uncharacterized protein.	Tr-type G domain-containing protein.	0.999
I1NM37_ORYGL	I1QFN9_ORYGL	I1NM37	I1QFN9	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.988
I1NM37_ORYGL	I1QMA5_ORYGL	I1NM37	I1QMA5	Uncharacterized protein.	Uncharacterized protein.	0.995
I1NM37_ORYGL	I1R1W3_ORYGL	I1NM37	I1R1W3	Uncharacterized protein.	Sm domain-containing protein.	0.984
I1NVK3_ORYGL	I1NM37_ORYGL	I1NVK3	I1NM37	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.986
I1NVK3_ORYGL	I1P0N9_ORYGL	I1NVK3	I1P0N9	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.973
I1NVK3_ORYGL	I1P2H3_ORYGL	I1NVK3	I1P2H3	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.998
I1NVK3_ORYGL	I1P9C0_ORYGL	I1NVK3	I1P9C0	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.998
I1NVK3_ORYGL	I1PBD3_ORYGL	I1NVK3	I1PBD3	Small nuclear ribonucleoprotein Sm D2.	WD_REPEATS_REGION domain-containing protein.	0.975
I1NVK3_ORYGL	I1PC76_ORYGL	I1NVK3	I1PC76	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein G.	0.999
I1NVK3_ORYGL	I1Q3J1_ORYGL	I1NVK3	I1Q3J1	Small nuclear ribonucleoprotein Sm D2.	Tr-type G domain-containing protein.	0.990
I1NVK3_ORYGL	I1QFN9_ORYGL	I1NVK3	I1QFN9	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
I1NVK3_ORYGL	I1QMA5_ORYGL	I1NVK3	I1QMA5	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.983
I1NVK3_ORYGL	I1R1W3_ORYGL	I1NVK3	I1R1W3	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.998