(13 nodes) Establishment of Sister Chromatid Cohesion network (Oryza glaberrima)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1NTR1_ORYGL	Uncharacterized protein. (1381 aa)
	I1NUA4_ORYGL	Uncharacterized protein. (1055 aa)
	I1NX00_ORYGL	SMC_N domain-containing protein. (481 aa)
	I1NX01_ORYGL	SMC hinge domain-containing protein. (661 aa)
	I1NX02_ORYGL	SMC_N domain-containing protein. (255 aa)
	I1PGX8_ORYGL	DUF641 domain-containing protein. (493 aa)
	I1PMH0_ORYGL	Uncharacterized protein. (749 aa)
	I1PMP8_ORYGL	Uncharacterized protein. (326 aa)
	I1PYA2_ORYGL	Uncharacterized protein. (608 aa)
	I1Q736_ORYGL	Uncharacterized protein. (1560 aa)
	I1Q7G9_ORYGL	Sister chromatid cohesion protein. (999 aa)
	I1QWA5_ORYGL	Uncharacterized protein. (100 aa)
	I1R302_ORYGL	Uncharacterized protein. (342 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NTR1_ORYGL	I1NUA4_ORYGL	I1NTR1	I1NUA4	Uncharacterized protein.	Uncharacterized protein.	0.897
I1NTR1_ORYGL	I1NX00_ORYGL	I1NTR1	I1NX00	Uncharacterized protein.	SMC_N domain-containing protein.	0.920
I1NTR1_ORYGL	I1NX01_ORYGL	I1NTR1	I1NX01	Uncharacterized protein.	SMC hinge domain-containing protein.	0.920
I1NTR1_ORYGL	I1NX02_ORYGL	I1NTR1	I1NX02	Uncharacterized protein.	SMC_N domain-containing protein.	0.920
I1NTR1_ORYGL	I1PGX8_ORYGL	I1NTR1	I1PGX8	Uncharacterized protein.	DUF641 domain-containing protein.	0.969
I1NTR1_ORYGL	I1PMH0_ORYGL	I1NTR1	I1PMH0	Uncharacterized protein.	Uncharacterized protein.	0.891
I1NTR1_ORYGL	I1PMP8_ORYGL	I1NTR1	I1PMP8	Uncharacterized protein.	Uncharacterized protein.	0.848
I1NTR1_ORYGL	I1PYA2_ORYGL	I1NTR1	I1PYA2	Uncharacterized protein.	Uncharacterized protein.	0.912
I1NTR1_ORYGL	I1Q7G9_ORYGL	I1NTR1	I1Q7G9	Uncharacterized protein.	Sister chromatid cohesion protein.	0.919
I1NTR1_ORYGL	I1R302_ORYGL	I1NTR1	I1R302	Uncharacterized protein.	Uncharacterized protein.	0.848
I1NUA4_ORYGL	I1NTR1_ORYGL	I1NUA4	I1NTR1	Uncharacterized protein.	Uncharacterized protein.	0.897
I1NUA4_ORYGL	I1NX00_ORYGL	I1NUA4	I1NX00	Uncharacterized protein.	SMC_N domain-containing protein.	0.951
I1NUA4_ORYGL	I1NX01_ORYGL	I1NUA4	I1NX01	Uncharacterized protein.	SMC hinge domain-containing protein.	0.951
I1NUA4_ORYGL	I1NX02_ORYGL	I1NUA4	I1NX02	Uncharacterized protein.	SMC_N domain-containing protein.	0.951
I1NUA4_ORYGL	I1PGX8_ORYGL	I1NUA4	I1PGX8	Uncharacterized protein.	DUF641 domain-containing protein.	0.987
I1NUA4_ORYGL	I1PMH0_ORYGL	I1NUA4	I1PMH0	Uncharacterized protein.	Uncharacterized protein.	0.612
I1NUA4_ORYGL	I1PMP8_ORYGL	I1NUA4	I1PMP8	Uncharacterized protein.	Uncharacterized protein.	0.876
I1NUA4_ORYGL	I1PYA2_ORYGL	I1NUA4	I1PYA2	Uncharacterized protein.	Uncharacterized protein.	0.582
I1NUA4_ORYGL	I1Q736_ORYGL	I1NUA4	I1Q736	Uncharacterized protein.	Uncharacterized protein.	0.936
I1NUA4_ORYGL	I1Q7G9_ORYGL	I1NUA4	I1Q7G9	Uncharacterized protein.	Sister chromatid cohesion protein.	0.979