5 items (Oryza glaberrima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1PC81_ORYGL	Uncharacterized protein. (163 aa)
	I1PMD5_ORYGL	Uncharacterized protein. (235 aa)
	I1PR33_ORYGL	Uncharacterized protein. (81 aa)
	I1QVS6_ORYGL	AAI domain-containing protein. (136 aa)
	I1R5R5_ORYGL	Uncharacterized protein. (201 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1PC81_ORYGL	I1PMD5_ORYGL	I1PC81	I1PMD5	Uncharacterized protein.	Uncharacterized protein.	0.534
I1PC81_ORYGL	I1PR33_ORYGL	I1PC81	I1PR33	Uncharacterized protein.	Uncharacterized protein.	0.537
I1PC81_ORYGL	I1QVS6_ORYGL	I1PC81	I1QVS6	Uncharacterized protein.	AAI domain-containing protein.	0.529
I1PC81_ORYGL	I1R5R5_ORYGL	I1PC81	I1R5R5	Uncharacterized protein.	Uncharacterized protein.	0.542
I1PMD5_ORYGL	I1PC81_ORYGL	I1PMD5	I1PC81	Uncharacterized protein.	Uncharacterized protein.	0.534
I1PMD5_ORYGL	I1PR33_ORYGL	I1PMD5	I1PR33	Uncharacterized protein.	Uncharacterized protein.	0.533
I1PMD5_ORYGL	I1QVS6_ORYGL	I1PMD5	I1QVS6	Uncharacterized protein.	AAI domain-containing protein.	0.536
I1PMD5_ORYGL	I1R5R5_ORYGL	I1PMD5	I1R5R5	Uncharacterized protein.	Uncharacterized protein.	0.536
I1PR33_ORYGL	I1PC81_ORYGL	I1PR33	I1PC81	Uncharacterized protein.	Uncharacterized protein.	0.537
I1PR33_ORYGL	I1PMD5_ORYGL	I1PR33	I1PMD5	Uncharacterized protein.	Uncharacterized protein.	0.533
I1PR33_ORYGL	I1QVS6_ORYGL	I1PR33	I1QVS6	Uncharacterized protein.	AAI domain-containing protein.	0.538
I1PR33_ORYGL	I1R5R5_ORYGL	I1PR33	I1R5R5	Uncharacterized protein.	Uncharacterized protein.	0.535
I1QVS6_ORYGL	I1PC81_ORYGL	I1QVS6	I1PC81	AAI domain-containing protein.	Uncharacterized protein.	0.529
I1QVS6_ORYGL	I1PMD5_ORYGL	I1QVS6	I1PMD5	AAI domain-containing protein.	Uncharacterized protein.	0.536
I1QVS6_ORYGL	I1PR33_ORYGL	I1QVS6	I1PR33	AAI domain-containing protein.	Uncharacterized protein.	0.538
I1QVS6_ORYGL	I1R5R5_ORYGL	I1QVS6	I1R5R5	AAI domain-containing protein.	Uncharacterized protein.	0.534
I1R5R5_ORYGL	I1PC81_ORYGL	I1R5R5	I1PC81	Uncharacterized protein.	Uncharacterized protein.	0.542
I1R5R5_ORYGL	I1PMD5_ORYGL	I1R5R5	I1PMD5	Uncharacterized protein.	Uncharacterized protein.	0.536
I1R5R5_ORYGL	I1PR33_ORYGL	I1R5R5	I1PR33	Uncharacterized protein.	Uncharacterized protein.	0.535
I1R5R5_ORYGL	I1QVS6_ORYGL	I1R5R5	I1QVS6	Uncharacterized protein.	AAI domain-containing protein.	0.534