(5 nodes) Mixed, incl. Transcription factor DIVARICATA-like, and G-box binding factor 1-like, bZIP domain, plant network (Oryza glaberrima)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1PW28_ORYGL	Uncharacterized protein. (134 aa)
	I1PZU7_ORYGL	AP2/ERF domain-containing protein. (184 aa)
	I1Q999_ORYGL	Dof-type domain-containing protein. (333 aa)
	I1QI13_ORYGL	BZIP domain-containing protein. (180 aa)
	I1QVF6_ORYGL	Uncharacterized protein. (216 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1PW28_ORYGL	I1QI13_ORYGL	I1PW28	I1QI13	Uncharacterized protein.	BZIP domain-containing protein.	0.435
I1PW28_ORYGL	I1QVF6_ORYGL	I1PW28	I1QVF6	Uncharacterized protein.	Uncharacterized protein.	0.493
I1PZU7_ORYGL	I1Q999_ORYGL	I1PZU7	I1Q999	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.602
I1PZU7_ORYGL	I1QI13_ORYGL	I1PZU7	I1QI13	AP2/ERF domain-containing protein.	BZIP domain-containing protein.	0.465
I1Q999_ORYGL	I1PZU7_ORYGL	I1Q999	I1PZU7	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.602
I1Q999_ORYGL	I1QI13_ORYGL	I1Q999	I1QI13	Dof-type domain-containing protein.	BZIP domain-containing protein.	0.474
I1QI13_ORYGL	I1PW28_ORYGL	I1QI13	I1PW28	BZIP domain-containing protein.	Uncharacterized protein.	0.435
I1QI13_ORYGL	I1PZU7_ORYGL	I1QI13	I1PZU7	BZIP domain-containing protein.	AP2/ERF domain-containing protein.	0.465
I1QI13_ORYGL	I1Q999_ORYGL	I1QI13	I1Q999	BZIP domain-containing protein.	Dof-type domain-containing protein.	0.474
I1QVF6_ORYGL	I1PW28_ORYGL	I1QVF6	I1PW28	Uncharacterized protein.	Uncharacterized protein.	0.493