(12 nodes) Mixed, incl. Protein TONSOKU, and Histone H3/CENP-A network (Oryza glaberrima)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1NTN6_ORYGL	Histone H3; Belongs to the histone H3 family. (136 aa)
	I1P3M5_ORYGL	Uncharacterized protein. (534 aa)
	I1P4X2_ORYGL	Uncharacterized protein. (112 aa)
	I1P4X3_ORYGL	TPR_REGION domain-containing protein. (366 aa)
	I1P4X4_ORYGL	Uncharacterized protein. (274 aa)
	I1PBX5_ORYGL	Histone H3; Belongs to the histone H3 family. (136 aa)
	I1PIB6_ORYGL	Uncharacterized protein. (377 aa)
	I1Q1A4_ORYGL	Uncharacterized protein. (478 aa)
	I1Q1A5_ORYGL	SnAC domain-containing protein. (2825 aa)
	I1QM16_ORYGL	Uncharacterized protein. (428 aa)
	I1QQ03_ORYGL	Uncharacterized protein. (392 aa)
	I1R871_ORYGL	Uncharacterized protein. (439 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NTN6_ORYGL	I1P4X2_ORYGL	I1NTN6	I1P4X2	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.978
I1NTN6_ORYGL	I1P4X3_ORYGL	I1NTN6	I1P4X3	Histone H3; Belongs to the histone H3 family.	TPR_REGION domain-containing protein.	0.978
I1NTN6_ORYGL	I1P4X4_ORYGL	I1NTN6	I1P4X4	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.978
I1NTN6_ORYGL	I1PBX5_ORYGL	I1NTN6	I1PBX5	Histone H3; Belongs to the histone H3 family.	Histone H3; Belongs to the histone H3 family.	0.498
I1NTN6_ORYGL	I1PIB6_ORYGL	I1NTN6	I1PIB6	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.817
I1NTN6_ORYGL	I1Q1A4_ORYGL	I1NTN6	I1Q1A4	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.919
I1NTN6_ORYGL	I1Q1A5_ORYGL	I1NTN6	I1Q1A5	Histone H3; Belongs to the histone H3 family.	SnAC domain-containing protein.	0.919
I1NTN6_ORYGL	I1QM16_ORYGL	I1NTN6	I1QM16	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.651
I1NTN6_ORYGL	I1R871_ORYGL	I1NTN6	I1R871	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.651
I1P3M5_ORYGL	I1P4X2_ORYGL	I1P3M5	I1P4X2	Uncharacterized protein.	Uncharacterized protein.	0.986
I1P3M5_ORYGL	I1P4X3_ORYGL	I1P3M5	I1P4X3	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.988
I1P3M5_ORYGL	I1P4X4_ORYGL	I1P3M5	I1P4X4	Uncharacterized protein.	Uncharacterized protein.	0.978
I1P3M5_ORYGL	I1PIB6_ORYGL	I1P3M5	I1PIB6	Uncharacterized protein.	Uncharacterized protein.	0.433
I1P3M5_ORYGL	I1Q1A4_ORYGL	I1P3M5	I1Q1A4	Uncharacterized protein.	Uncharacterized protein.	0.919
I1P3M5_ORYGL	I1Q1A5_ORYGL	I1P3M5	I1Q1A5	Uncharacterized protein.	SnAC domain-containing protein.	0.919
I1P3M5_ORYGL	I1QM16_ORYGL	I1P3M5	I1QM16	Uncharacterized protein.	Uncharacterized protein.	0.651
I1P3M5_ORYGL	I1R871_ORYGL	I1P3M5	I1R871	Uncharacterized protein.	Uncharacterized protein.	0.651
I1P4X2_ORYGL	I1NTN6_ORYGL	I1P4X2	I1NTN6	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.978
I1P4X2_ORYGL	I1P3M5_ORYGL	I1P4X2	I1P3M5	Uncharacterized protein.	Uncharacterized protein.	0.986
I1P4X2_ORYGL	I1P4X3_ORYGL	I1P4X2	I1P4X3	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.717