(8 nodes) Condensin complex, and Mitotic chromosome condensation network (Oryza glaberrima)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1NNS3_ORYGL	Uncharacterized protein. (404 aa)
	I1NUE4_ORYGL	Structural maintenance of chromosomes protein. (1175 aa)
	I1PDH5_ORYGL	Uncharacterized protein. (1126 aa)
	I1PWX6_ORYGL	Structural maintenance of chromosomes protein. (1239 aa)
	I1Q1A9_ORYGL	Cnd3 domain-containing protein. (1050 aa)
	I1QB33_ORYGL	Uncharacterized protein. (677 aa)
	I1QCV4_ORYGL	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. (1324 aa)
	I1R720_ORYGL	Cnd1 domain-containing protein. (1286 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NNS3_ORYGL	I1NUE4_ORYGL	I1NNS3	I1NUE4	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.999
I1NNS3_ORYGL	I1PDH5_ORYGL	I1NNS3	I1PDH5	Uncharacterized protein.	Uncharacterized protein.	0.921
I1NNS3_ORYGL	I1PWX6_ORYGL	I1NNS3	I1PWX6	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.999
I1NNS3_ORYGL	I1Q1A9_ORYGL	I1NNS3	I1Q1A9	Uncharacterized protein.	Cnd3 domain-containing protein.	0.999
I1NNS3_ORYGL	I1QB33_ORYGL	I1NNS3	I1QB33	Uncharacterized protein.	Uncharacterized protein.	0.674
I1NNS3_ORYGL	I1QCV4_ORYGL	I1NNS3	I1QCV4	Uncharacterized protein.	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	0.999
I1NNS3_ORYGL	I1R720_ORYGL	I1NNS3	I1R720	Uncharacterized protein.	Cnd1 domain-containing protein.	0.793
I1NUE4_ORYGL	I1NNS3_ORYGL	I1NUE4	I1NNS3	Structural maintenance of chromosomes protein.	Uncharacterized protein.	0.999
I1NUE4_ORYGL	I1PDH5_ORYGL	I1NUE4	I1PDH5	Structural maintenance of chromosomes protein.	Uncharacterized protein.	0.999
I1NUE4_ORYGL	I1PWX6_ORYGL	I1NUE4	I1PWX6	Structural maintenance of chromosomes protein.	Structural maintenance of chromosomes protein.	0.999
I1NUE4_ORYGL	I1Q1A9_ORYGL	I1NUE4	I1Q1A9	Structural maintenance of chromosomes protein.	Cnd3 domain-containing protein.	0.999
I1NUE4_ORYGL	I1QB33_ORYGL	I1NUE4	I1QB33	Structural maintenance of chromosomes protein.	Uncharacterized protein.	0.999
I1NUE4_ORYGL	I1QCV4_ORYGL	I1NUE4	I1QCV4	Structural maintenance of chromosomes protein.	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	0.999
I1NUE4_ORYGL	I1R720_ORYGL	I1NUE4	I1R720	Structural maintenance of chromosomes protein.	Cnd1 domain-containing protein.	0.999
I1PDH5_ORYGL	I1NNS3_ORYGL	I1PDH5	I1NNS3	Uncharacterized protein.	Uncharacterized protein.	0.921
I1PDH5_ORYGL	I1NUE4_ORYGL	I1PDH5	I1NUE4	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.999
I1PDH5_ORYGL	I1PWX6_ORYGL	I1PDH5	I1PWX6	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.975
I1PDH5_ORYGL	I1Q1A9_ORYGL	I1PDH5	I1Q1A9	Uncharacterized protein.	Cnd3 domain-containing protein.	0.891
I1PDH5_ORYGL	I1QB33_ORYGL	I1PDH5	I1QB33	Uncharacterized protein.	Uncharacterized protein.	0.999
I1PDH5_ORYGL	I1QCV4_ORYGL	I1PDH5	I1QCV4	Uncharacterized protein.	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	0.847