(110 nodes) Mixed, incl. Small auxin-up RNA, and Kelch repeat type 1 network (Oryza glaberrima)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C0JA22_ORYGL	Uncharacterized protein. (597 aa)
	G2XMP5_ORYGL	Hypothetical_protein. (415 aa)
	I1NJW0_ORYGL	Uncharacterized protein. (315 aa)
	I1NN25_ORYGL	Uncharacterized protein. (263 aa)
	I1NPS4_ORYGL	Glycos_transf_1 domain-containing protein. (712 aa)
	I1NPY0_ORYGL	Uncharacterized protein. (268 aa)
	I1NQT2_ORYGL	Uncharacterized protein. (201 aa)
	I1NRG4_ORYGL	BURP domain-containing protein. (429 aa)
	I1NS91_ORYGL	Uncharacterized protein. (481 aa)
	I1NSF6_ORYGL	Uncharacterized protein. (329 aa)
	I1NT02_ORYGL	Fe2OG dioxygenase domain-containing protein. (394 aa)
	I1NV25_ORYGL	Uncharacterized protein. (514 aa)
	I1NX40_ORYGL	Uncharacterized protein. (100 aa)
	I1NYD3_ORYGL	F-box domain-containing protein. (429 aa)
	I1NYS9_ORYGL	Uncharacterized protein. (340 aa)
	I1NZN8_ORYGL	Reticulon-like protein. (451 aa)
	I1P027_ORYGL	Uncharacterized protein. (810 aa)
	I1P2U4_ORYGL	4HBT domain-containing protein. (171 aa)
	I1P499_ORYGL	Uncharacterized protein. (426 aa)
	I1P4H0_ORYGL	Uncharacterized protein. (633 aa)
	I1P5Q9_ORYGL	Uncharacterized protein. (121 aa)
	I1P7Y6_ORYGL	F-box domain-containing protein. (438 aa)
	I1P7Y9_ORYGL	Uncharacterized protein. (265 aa)
	I1P816_ORYGL	Uncharacterized protein. (431 aa)
	I1P8P2_ORYGL	Uncharacterized protein; Belongs to the NPH3 family. (605 aa)
	I1P9G0_ORYGL	Uncharacterized protein. (649 aa)
	I1P9H4_ORYGL	Uncharacterized protein. (445 aa)
	I1PCA0_ORYGL	F-box domain-containing protein. (318 aa)
	I1PDE9_ORYGL	Uncharacterized protein; Belongs to the NPH3 family. (637 aa)
	I1PDX4_ORYGL	Uncharacterized protein. (362 aa)
	I1PFZ6_ORYGL	DYW_deaminase domain-containing protein. (804 aa)
	I1PG19_ORYGL	Uncharacterized protein. (241 aa)
	I1PI81_ORYGL	GRAS domain-containing protein; Belongs to the GRAS family. (580 aa)
	I1PIQ3_ORYGL	Uncharacterized protein. (52 aa)
	I1PMD0_ORYGL	Uncharacterized protein. (125 aa)
	I1PN04_ORYGL	PG_binding_1 domain-containing protein. (367 aa)
	I1PP22_ORYGL	FAS1 domain-containing protein. (431 aa)
	I1PP28_ORYGL	Uncharacterized protein. (180 aa)
	I1PPM6_ORYGL	Uncharacterized protein. (561 aa)
	I1PQ34_ORYGL	Uncharacterized protein. (453 aa)
	I1PR24_ORYGL	Uncharacterized protein. (1011 aa)
	I1PR40_ORYGL	LEA_2 domain-containing protein. (220 aa)
	I1PR55_ORYGL	Uncharacterized protein. (203 aa)
	I1PRM5_ORYGL	Uncharacterized protein. (180 aa)
	I1PRW6_ORYGL	DUF569 domain-containing protein. (173 aa)
	I1PTW1_ORYGL	Uncharacterized protein. (204 aa)
	I1PU81_ORYGL	TLC domain-containing protein. (256 aa)
	I1PV01_ORYGL	Uncharacterized protein. (774 aa)
	I1PV97_ORYGL	RING-type domain-containing protein. (551 aa)
	I1PVC3_ORYGL	Uncharacterized protein. (259 aa)
	I1PVG8_ORYGL	TPM_phosphatase domain-containing protein. (299 aa)
	I1PVY6_ORYGL	Zinc_ribbon_15 domain-containing protein. (112 aa)
	I1PWW9_ORYGL	Uncharacterized protein. (132 aa)
	I1PYA8_ORYGL	Uncharacterized protein. (276 aa)
	I1PYB1_ORYGL	Uncharacterized protein. (297 aa)
	I1Q110_ORYGL	PMR5N domain-containing protein. (469 aa)
	I1Q1J9_ORYGL	Uncharacterized protein. (368 aa)
	I1Q1K6_ORYGL	Uncharacterized protein. (253 aa)
	I1Q274_ORYGL	DTW domain-containing protein. (356 aa)
	I1Q2Y3_ORYGL	Uncharacterized protein. (158 aa)
	I1Q3N5_ORYGL	Uncharacterized protein. (824 aa)
	I1Q3Q8_ORYGL	Glycosyltransferase family 92 protein; Belongs to the glycosyltransferase 92 family. (520 aa)
	I1Q516_ORYGL	Uncharacterized protein. (135 aa)
	I1Q5K5_ORYGL	Uncharacterized protein. (303 aa)
	I1Q6Y8_ORYGL	Uncharacterized protein. (101 aa)
	I1Q791_ORYGL	Uncharacterized protein. (308 aa)
	I1Q7Y9_ORYGL	Uncharacterized protein. (168 aa)
	I1Q8A6_ORYGL	Uncharacterized protein. (143 aa)
	I1QA61_ORYGL	BTB_2 domain-containing protein. (481 aa)
	I1QBJ0_ORYGL	Uncharacterized protein. (418 aa)
	I1QBJ1_ORYGL	Uncharacterized protein. (417 aa)
	I1QBJ2_ORYGL	Uncharacterized protein. (426 aa)
	I1QBT6_ORYGL	GRAS domain-containing protein; Belongs to the GRAS family. (473 aa)
	I1QCU3_ORYGL	Uncharacterized protein. (264 aa)
	I1QD05_ORYGL	Uncharacterized protein. (499 aa)
	I1QF75_ORYGL	Uncharacterized protein. (204 aa)
	I1QH08_ORYGL	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (524 aa)
	I1QJS5_ORYGL	Uncharacterized protein. (131 aa)
	I1QKK0_ORYGL	Uncharacterized protein. (93 aa)
	I1QKT4_ORYGL	Maturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily. (423 aa)
	I1QL54_ORYGL	Uncharacterized protein. (143 aa)
	I1QMY8_ORYGL	DYW_deaminase domain-containing protein. (755 aa)
	I1QN35_ORYGL	Uncharacterized protein. (93 aa)
	I1QP01_ORYGL	Uncharacterized protein; Belongs to the NPH3 family. (618 aa)
	I1QP31_ORYGL	Uncharacterized protein. (120 aa)
	I1QQI9_ORYGL	Uncharacterized protein. (116 aa)
	I1QQX6_ORYGL	Uncharacterized protein. (171 aa)
	I1QQX8_ORYGL	Uncharacterized protein. (144 aa)
	I1QQY3_ORYGL	Uncharacterized protein. (144 aa)
	I1QQY4_ORYGL	Uncharacterized protein. (141 aa)
	I1QQY7_ORYGL	Uncharacterized protein. (157 aa)
	I1QQY8_ORYGL	Uncharacterized protein. (144 aa)
	I1QQZ0_ORYGL	Uncharacterized protein. (144 aa)
	I1QQZ1_ORYGL	Uncharacterized protein. (141 aa)
	I1QQZ2_ORYGL	Uncharacterized protein. (144 aa)
	I1QQZ4_ORYGL	Uncharacterized protein. (138 aa)
	I1QQZ7_ORYGL	Uncharacterized protein. (142 aa)
	I1QQZ8_ORYGL	Uncharacterized protein. (150 aa)
	I1QU03_ORYGL	DUF641 domain-containing protein. (422 aa)
	I1QUE5_ORYGL	F-box domain-containing protein. (442 aa)
	I1QYH2_ORYGL	Uncharacterized protein. (430 aa)
	I1R1H0_ORYGL	Uncharacterized protein. (432 aa)
	I1R3T9_ORYGL	RING-type domain-containing protein. (676 aa)
	I1R577_ORYGL	TLC domain-containing protein. (258 aa)
	I1R675_ORYGL	Phytocyanin domain-containing protein. (234 aa)
	I1R6M8_ORYGL	Uncharacterized protein. (398 aa)
	I1R6T4_ORYGL	Uncharacterized protein. (124 aa)
	I1R6T5_ORYGL	Uncharacterized protein. (211 aa)
	I1R7Y0_ORYGL	Uncharacterized protein. (365 aa)
	I1R8Z4_ORYGL	Uncharacterized protein; Belongs to the NPH3 family. (638 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C0JA22_ORYGL	I1NS91_ORYGL	C0JA22	I1NS91	Uncharacterized protein.	Uncharacterized protein.	0.446
C0JA22_ORYGL	I1P9H4_ORYGL	C0JA22	I1P9H4	Uncharacterized protein.	Uncharacterized protein.	0.505
C0JA22_ORYGL	I1PRW6_ORYGL	C0JA22	I1PRW6	Uncharacterized protein.	DUF569 domain-containing protein.	0.417
C0JA22_ORYGL	I1PYA8_ORYGL	C0JA22	I1PYA8	Uncharacterized protein.	Uncharacterized protein.	0.454
C0JA22_ORYGL	I1Q2Y3_ORYGL	C0JA22	I1Q2Y3	Uncharacterized protein.	Uncharacterized protein.	0.523
C0JA22_ORYGL	I1QD05_ORYGL	C0JA22	I1QD05	Uncharacterized protein.	Uncharacterized protein.	0.444
C0JA22_ORYGL	I1QKT4_ORYGL	C0JA22	I1QKT4	Uncharacterized protein.	Maturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily.	0.422
C0JA22_ORYGL	I1QN35_ORYGL	C0JA22	I1QN35	Uncharacterized protein.	Uncharacterized protein.	0.444
C0JA22_ORYGL	I1QYH2_ORYGL	C0JA22	I1QYH2	Uncharacterized protein.	Uncharacterized protein.	0.488
G2XMP5_ORYGL	I1PVC3_ORYGL	G2XMP5	I1PVC3	Hypothetical_protein.	Uncharacterized protein.	0.481
G2XMP5_ORYGL	I1PVY6_ORYGL	G2XMP5	I1PVY6	Hypothetical_protein.	Zinc_ribbon_15 domain-containing protein.	0.455
G2XMP5_ORYGL	I1QQZ1_ORYGL	G2XMP5	I1QQZ1	Hypothetical_protein.	Uncharacterized protein.	0.414
I1NJW0_ORYGL	I1P5Q9_ORYGL	I1NJW0	I1P5Q9	Uncharacterized protein.	Uncharacterized protein.	0.507
I1NJW0_ORYGL	I1Q2Y3_ORYGL	I1NJW0	I1Q2Y3	Uncharacterized protein.	Uncharacterized protein.	0.464
I1NJW0_ORYGL	I1QJS5_ORYGL	I1NJW0	I1QJS5	Uncharacterized protein.	Uncharacterized protein.	0.493
I1NJW0_ORYGL	I1QN35_ORYGL	I1NJW0	I1QN35	Uncharacterized protein.	Uncharacterized protein.	0.540
I1NJW0_ORYGL	I1QQI9_ORYGL	I1NJW0	I1QQI9	Uncharacterized protein.	Uncharacterized protein.	0.457
I1NN25_ORYGL	I1PN04_ORYGL	I1NN25	I1PN04	Uncharacterized protein.	PG_binding_1 domain-containing protein.	0.429
I1NN25_ORYGL	I1PU81_ORYGL	I1NN25	I1PU81	Uncharacterized protein.	TLC domain-containing protein.	0.431
I1NN25_ORYGL	I1PVG8_ORYGL	I1NN25	I1PVG8	Uncharacterized protein.	TPM_phosphatase domain-containing protein.	0.400