(22 nodes) Mixed, incl. Nucleoside transporter, and NPH3 domain network (Oryza glaberrima)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1NSF6_ORYGL	Uncharacterized protein. (329 aa)
	I1NYS9_ORYGL	Uncharacterized protein. (340 aa)
	I1P027_ORYGL	Uncharacterized protein. (810 aa)
	I1P4H0_ORYGL	Uncharacterized protein. (633 aa)
	I1P7Y6_ORYGL	F-box domain-containing protein. (438 aa)
	I1P8P2_ORYGL	Uncharacterized protein; Belongs to the NPH3 family. (605 aa)
	I1PDE9_ORYGL	Uncharacterized protein; Belongs to the NPH3 family. (637 aa)
	I1PI81_ORYGL	GRAS domain-containing protein; Belongs to the GRAS family. (580 aa)
	I1PIQ3_ORYGL	Uncharacterized protein. (52 aa)
	I1PV01_ORYGL	Uncharacterized protein. (774 aa)
	I1Q1K6_ORYGL	Uncharacterized protein. (253 aa)
	I1Q3Q8_ORYGL	Glycosyltransferase family 92 protein; Belongs to the glycosyltransferase 92 family. (520 aa)
	I1QBJ0_ORYGL	Uncharacterized protein. (418 aa)
	I1QBJ1_ORYGL	Uncharacterized protein. (417 aa)
	I1QBJ2_ORYGL	Uncharacterized protein. (426 aa)
	I1QBT6_ORYGL	GRAS domain-containing protein; Belongs to the GRAS family. (473 aa)
	I1QKK0_ORYGL	Uncharacterized protein. (93 aa)
	I1QMY8_ORYGL	DYW_deaminase domain-containing protein. (755 aa)
	I1QP01_ORYGL	Uncharacterized protein; Belongs to the NPH3 family. (618 aa)
	I1QQY8_ORYGL	Uncharacterized protein. (144 aa)
	I1QUE5_ORYGL	F-box domain-containing protein. (442 aa)
	I1R8Z4_ORYGL	Uncharacterized protein; Belongs to the NPH3 family. (638 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NSF6_ORYGL	I1Q1K6_ORYGL	I1NSF6	I1Q1K6	Uncharacterized protein.	Uncharacterized protein.	0.491
I1NSF6_ORYGL	I1QKK0_ORYGL	I1NSF6	I1QKK0	Uncharacterized protein.	Uncharacterized protein.	0.417
I1NSF6_ORYGL	I1QQY8_ORYGL	I1NSF6	I1QQY8	Uncharacterized protein.	Uncharacterized protein.	0.450
I1NYS9_ORYGL	I1P4H0_ORYGL	I1NYS9	I1P4H0	Uncharacterized protein.	Uncharacterized protein.	0.456
I1NYS9_ORYGL	I1QKK0_ORYGL	I1NYS9	I1QKK0	Uncharacterized protein.	Uncharacterized protein.	0.453
I1P027_ORYGL	I1P7Y6_ORYGL	I1P027	I1P7Y6	Uncharacterized protein.	F-box domain-containing protein.	0.494
I1P027_ORYGL	I1PIQ3_ORYGL	I1P027	I1PIQ3	Uncharacterized protein.	Uncharacterized protein.	0.459
I1P027_ORYGL	I1QKK0_ORYGL	I1P027	I1QKK0	Uncharacterized protein.	Uncharacterized protein.	0.509
I1P027_ORYGL	I1QUE5_ORYGL	I1P027	I1QUE5	Uncharacterized protein.	F-box domain-containing protein.	0.504
I1P4H0_ORYGL	I1NYS9_ORYGL	I1P4H0	I1NYS9	Uncharacterized protein.	Uncharacterized protein.	0.456
I1P4H0_ORYGL	I1P7Y6_ORYGL	I1P4H0	I1P7Y6	Uncharacterized protein.	F-box domain-containing protein.	0.403
I1P4H0_ORYGL	I1P8P2_ORYGL	I1P4H0	I1P8P2	Uncharacterized protein.	Uncharacterized protein; Belongs to the NPH3 family.	0.406
I1P4H0_ORYGL	I1PDE9_ORYGL	I1P4H0	I1PDE9	Uncharacterized protein.	Uncharacterized protein; Belongs to the NPH3 family.	0.422
I1P4H0_ORYGL	I1QBT6_ORYGL	I1P4H0	I1QBT6	Uncharacterized protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.469
I1P4H0_ORYGL	I1QKK0_ORYGL	I1P4H0	I1QKK0	Uncharacterized protein.	Uncharacterized protein.	0.514
I1P4H0_ORYGL	I1QUE5_ORYGL	I1P4H0	I1QUE5	Uncharacterized protein.	F-box domain-containing protein.	0.408
I1P4H0_ORYGL	I1R8Z4_ORYGL	I1P4H0	I1R8Z4	Uncharacterized protein.	Uncharacterized protein; Belongs to the NPH3 family.	0.407
I1P7Y6_ORYGL	I1P027_ORYGL	I1P7Y6	I1P027	F-box domain-containing protein.	Uncharacterized protein.	0.494
I1P7Y6_ORYGL	I1P4H0_ORYGL	I1P7Y6	I1P4H0	F-box domain-containing protein.	Uncharacterized protein.	0.403
I1P7Y6_ORYGL	I1PIQ3_ORYGL	I1P7Y6	I1PIQ3	F-box domain-containing protein.	Uncharacterized protein.	0.504