11 items (Oryza glaberrima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1NY61_ORYGL	Uncharacterized protein. (507 aa)
	I1P3R9_ORYGL	Uncharacterized protein. (244 aa)
	I1P615_ORYGL	SWIB domain-containing protein. (405 aa)
	I1PFK2_ORYGL	J domain-containing protein. (617 aa)
	I1PG40_ORYGL	Uncharacterized protein; Belongs to the actin family. (360 aa)
	I1PKK2_ORYGL	SWIB domain-containing protein. (463 aa)
	I1PMA5_ORYGL	Uncharacterized protein. (560 aa)
	I1PU24_ORYGL	SANT domain-containing protein. (68 aa)
	I1QC38_ORYGL	Uncharacterized protein. (460 aa)
	I1QFH0_ORYGL	Uncharacterized protein; Belongs to the actin family. (489 aa)
	I1QQX0_ORYGL	Uncharacterized protein. (301 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NY61_ORYGL	I1P3R9_ORYGL	I1NY61	I1P3R9	Uncharacterized protein.	Uncharacterized protein.	0.942
I1NY61_ORYGL	I1P615_ORYGL	I1NY61	I1P615	Uncharacterized protein.	SWIB domain-containing protein.	0.908
I1NY61_ORYGL	I1PFK2_ORYGL	I1NY61	I1PFK2	Uncharacterized protein.	J domain-containing protein.	0.912
I1NY61_ORYGL	I1PG40_ORYGL	I1NY61	I1PG40	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.702
I1NY61_ORYGL	I1PKK2_ORYGL	I1NY61	I1PKK2	Uncharacterized protein.	SWIB domain-containing protein.	0.908
I1NY61_ORYGL	I1PMA5_ORYGL	I1NY61	I1PMA5	Uncharacterized protein.	Uncharacterized protein.	0.611
I1NY61_ORYGL	I1PU24_ORYGL	I1NY61	I1PU24	Uncharacterized protein.	SANT domain-containing protein.	0.460
I1NY61_ORYGL	I1QC38_ORYGL	I1NY61	I1QC38	Uncharacterized protein.	Uncharacterized protein.	0.936
I1NY61_ORYGL	I1QFH0_ORYGL	I1NY61	I1QFH0	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.950
I1NY61_ORYGL	I1QQX0_ORYGL	I1NY61	I1QQX0	Uncharacterized protein.	Uncharacterized protein.	0.910
I1P3R9_ORYGL	I1NY61_ORYGL	I1P3R9	I1NY61	Uncharacterized protein.	Uncharacterized protein.	0.942
I1P3R9_ORYGL	I1P615_ORYGL	I1P3R9	I1P615	Uncharacterized protein.	SWIB domain-containing protein.	0.987
I1P3R9_ORYGL	I1PG40_ORYGL	I1P3R9	I1PG40	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.876
I1P3R9_ORYGL	I1PKK2_ORYGL	I1P3R9	I1PKK2	Uncharacterized protein.	SWIB domain-containing protein.	0.987
I1P3R9_ORYGL	I1PMA5_ORYGL	I1P3R9	I1PMA5	Uncharacterized protein.	Uncharacterized protein.	0.942
I1P3R9_ORYGL	I1PU24_ORYGL	I1P3R9	I1PU24	Uncharacterized protein.	SANT domain-containing protein.	0.927
I1P3R9_ORYGL	I1QC38_ORYGL	I1P3R9	I1QC38	Uncharacterized protein.	Uncharacterized protein.	0.990
I1P3R9_ORYGL	I1QFH0_ORYGL	I1P3R9	I1QFH0	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.996
I1P3R9_ORYGL	I1QQX0_ORYGL	I1P3R9	I1QQX0	Uncharacterized protein.	Uncharacterized protein.	0.981
I1P615_ORYGL	I1NY61_ORYGL	I1P615	I1NY61	SWIB domain-containing protein.	Uncharacterized protein.	0.908