11 items (Oryza glaberrima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1NNI4_ORYGL	TAF domain-containing protein. (541 aa)
	I1NQN4_ORYGL	TAFII28 domain-containing protein. (211 aa)
	I1NTB1_ORYGL	TFIID_20kDa domain-containing protein. (543 aa)
	I1NTI3_ORYGL	TFIID_20kDa domain-containing protein. (309 aa)
	I1PC66_ORYGL	Uncharacterized protein. (250 aa)
	I1PCN0_ORYGL	Uncharacterized protein. (780 aa)
	I1PUN4_ORYGL	TAFII55_N domain-containing protein. (200 aa)
	I1Q430_ORYGL	Uncharacterized protein. (1823 aa)
	I1Q450_ORYGL	WD_REPEATS_REGION domain-containing protein. (666 aa)
	I1QNW5_ORYGL	Uncharacterized protein. (1527 aa)
	I1QP59_ORYGL	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. (165 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NNI4_ORYGL	I1NQN4_ORYGL	I1NNI4	I1NQN4	TAF domain-containing protein.	TAFII28 domain-containing protein.	0.999
I1NNI4_ORYGL	I1NTB1_ORYGL	I1NNI4	I1NTB1	TAF domain-containing protein.	TFIID_20kDa domain-containing protein.	0.986
I1NNI4_ORYGL	I1NTI3_ORYGL	I1NNI4	I1NTI3	TAF domain-containing protein.	TFIID_20kDa domain-containing protein.	0.986
I1NNI4_ORYGL	I1PC66_ORYGL	I1NNI4	I1PC66	TAF domain-containing protein.	Uncharacterized protein.	0.991
I1NNI4_ORYGL	I1PCN0_ORYGL	I1NNI4	I1PCN0	TAF domain-containing protein.	Uncharacterized protein.	0.985
I1NNI4_ORYGL	I1PUN4_ORYGL	I1NNI4	I1PUN4	TAF domain-containing protein.	TAFII55_N domain-containing protein.	0.994
I1NNI4_ORYGL	I1Q430_ORYGL	I1NNI4	I1Q430	TAF domain-containing protein.	Uncharacterized protein.	0.999
I1NNI4_ORYGL	I1Q450_ORYGL	I1NNI4	I1Q450	TAF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
I1NNI4_ORYGL	I1QNW5_ORYGL	I1NNI4	I1QNW5	TAF domain-containing protein.	Uncharacterized protein.	0.999
I1NNI4_ORYGL	I1QP59_ORYGL	I1NNI4	I1QP59	TAF domain-containing protein.	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	0.999
I1NQN4_ORYGL	I1NNI4_ORYGL	I1NQN4	I1NNI4	TAFII28 domain-containing protein.	TAF domain-containing protein.	0.999
I1NQN4_ORYGL	I1NTB1_ORYGL	I1NQN4	I1NTB1	TAFII28 domain-containing protein.	TFIID_20kDa domain-containing protein.	0.985
I1NQN4_ORYGL	I1NTI3_ORYGL	I1NQN4	I1NTI3	TAFII28 domain-containing protein.	TFIID_20kDa domain-containing protein.	0.985
I1NQN4_ORYGL	I1PC66_ORYGL	I1NQN4	I1PC66	TAFII28 domain-containing protein.	Uncharacterized protein.	0.991
I1NQN4_ORYGL	I1PCN0_ORYGL	I1NQN4	I1PCN0	TAFII28 domain-containing protein.	Uncharacterized protein.	0.985
I1NQN4_ORYGL	I1PUN4_ORYGL	I1NQN4	I1PUN4	TAFII28 domain-containing protein.	TAFII55_N domain-containing protein.	0.992
I1NQN4_ORYGL	I1Q430_ORYGL	I1NQN4	I1Q430	TAFII28 domain-containing protein.	Uncharacterized protein.	0.999
I1NQN4_ORYGL	I1Q450_ORYGL	I1NQN4	I1Q450	TAFII28 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
I1NQN4_ORYGL	I1QNW5_ORYGL	I1NQN4	I1QNW5	TAFII28 domain-containing protein.	Uncharacterized protein.	0.999
I1NQN4_ORYGL	I1QP59_ORYGL	I1NQN4	I1QP59	TAFII28 domain-containing protein.	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	0.999