(29 nodes) Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay network (Oryza glaberrima)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1R5N4_ORYGL	Uncharacterized protein. (160 aa)
	I1R267_ORYGL	Uncharacterized protein. (1398 aa)
	I1QWM4_ORYGL	Helicase ATP-binding domain-containing protein. (992 aa)
	I1QVP5_ORYGL	Uncharacterized protein. (1197 aa)
	I1QKQ2_ORYGL	Uncharacterized protein; Belongs to the DEAD box helicase family. (496 aa)
	I1QHG4_ORYGL	Uncharacterized protein. (1018 aa)
	I1QET0_ORYGL	MIF4G domain-containing protein. (839 aa)
	I1QAT8_ORYGL	Helicase ATP-binding domain-containing protein. (1277 aa)
	I1Q9F8_ORYGL	WH1 domain-containing protein. (387 aa)
	I1PYX6_ORYGL	Uncharacterized protein. (412 aa)
	I1PSA9_ORYGL	RRM domain-containing protein. (108 aa)
	I1PN91_ORYGL	Uncharacterized protein. (877 aa)
	I1PN51_ORYGL	MIF4G domain-containing protein. (452 aa)
	I1PMM9_ORYGL	RRM domain-containing protein. (480 aa)
	I1PLJ1_ORYGL	Smg4_UPF3 domain-containing protein. (507 aa)
	I1PGL3_ORYGL	RRM domain-containing protein. (197 aa)
	I1PCU2_ORYGL	Uncharacterized protein; Belongs to the DEAD box helicase family. (404 aa)
	I1PB96_ORYGL	MIF4G domain-containing protein. (868 aa)
	I1P9Q3_ORYGL	Mago-bind domain-containing protein. (225 aa)
	I1P5Q4_ORYGL	Uncharacterized protein. (1155 aa)
	I1P5C0_ORYGL	Nudix hydrolase domain-containing protein. (323 aa)
	I1P2I0_ORYGL	Uncharacterized protein. (1099 aa)
	I1NXG8_ORYGL	Uncharacterized protein. (1398 aa)
	I1NUJ1_ORYGL	Uncharacterized protein; Belongs to the DEAD box helicase family. (663 aa)
	I1NR97_ORYGL	Btz domain-containing protein. (399 aa)
	I1NPZ9_ORYGL	Uncharacterized protein; Belongs to the DEAD box helicase family. (405 aa)
	I1NPB8_ORYGL	Btz domain-containing protein. (690 aa)
	I1NNX3_ORYGL	Uncharacterized protein; Belongs to the DEAD box helicase family. (800 aa)
	I1NKP0_ORYGL	Uncharacterized protein; Belongs to the DEAD box helicase family. (758 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NKP0_ORYGL	I1NPZ9_ORYGL	I1NKP0	I1NPZ9	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.708
I1NKP0_ORYGL	I1NUJ1_ORYGL	I1NKP0	I1NUJ1	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.790
I1NKP0_ORYGL	I1P2I0_ORYGL	I1NKP0	I1P2I0	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.520
I1NKP0_ORYGL	I1P5C0_ORYGL	I1NKP0	I1P5C0	Uncharacterized protein; Belongs to the DEAD box helicase family.	Nudix hydrolase domain-containing protein.	0.403
I1NKP0_ORYGL	I1PB96_ORYGL	I1NKP0	I1PB96	Uncharacterized protein; Belongs to the DEAD box helicase family.	MIF4G domain-containing protein.	0.571
I1NKP0_ORYGL	I1PCU2_ORYGL	I1NKP0	I1PCU2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.707
I1NKP0_ORYGL	I1PGL3_ORYGL	I1NKP0	I1PGL3	Uncharacterized protein; Belongs to the DEAD box helicase family.	RRM domain-containing protein.	0.651
I1NKP0_ORYGL	I1PLJ1_ORYGL	I1NKP0	I1PLJ1	Uncharacterized protein; Belongs to the DEAD box helicase family.	Smg4_UPF3 domain-containing protein.	0.728
I1NKP0_ORYGL	I1PMM9_ORYGL	I1NKP0	I1PMM9	Uncharacterized protein; Belongs to the DEAD box helicase family.	RRM domain-containing protein.	0.680
I1NKP0_ORYGL	I1PN51_ORYGL	I1NKP0	I1PN51	Uncharacterized protein; Belongs to the DEAD box helicase family.	MIF4G domain-containing protein.	0.520
I1NKP0_ORYGL	I1PSA9_ORYGL	I1NKP0	I1PSA9	Uncharacterized protein; Belongs to the DEAD box helicase family.	RRM domain-containing protein.	0.651
I1NKP0_ORYGL	I1Q9F8_ORYGL	I1NKP0	I1Q9F8	Uncharacterized protein; Belongs to the DEAD box helicase family.	WH1 domain-containing protein.	0.458
I1NKP0_ORYGL	I1QAT8_ORYGL	I1NKP0	I1QAT8	Uncharacterized protein; Belongs to the DEAD box helicase family.	Helicase ATP-binding domain-containing protein.	0.457
I1NKP0_ORYGL	I1QET0_ORYGL	I1NKP0	I1QET0	Uncharacterized protein; Belongs to the DEAD box helicase family.	MIF4G domain-containing protein.	0.571
I1NKP0_ORYGL	I1QKQ2_ORYGL	I1NKP0	I1QKQ2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.784
I1NKP0_ORYGL	I1QWM4_ORYGL	I1NKP0	I1QWM4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Helicase ATP-binding domain-containing protein.	0.457
I1NKP0_ORYGL	I1R5N4_ORYGL	I1NKP0	I1R5N4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.696
I1NNX3_ORYGL	I1NPZ9_ORYGL	I1NNX3	I1NPZ9	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.708
I1NNX3_ORYGL	I1NUJ1_ORYGL	I1NNX3	I1NUJ1	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.790
I1NNX3_ORYGL	I1P2I0_ORYGL	I1NNX3	I1P2I0	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.520