(29 nodes) Cellular response to phosphate starvation network (Oryza glaberrima)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1PDX0_ORYGL	GCK domain-containing protein. (195 aa)
	I1PC55_ORYGL	SPX domain-containing protein. (238 aa)
	I1P9Y1_ORYGL	Uncharacterized protein. (265 aa)
	I1P9S8_ORYGL	Uncharacterized protein. (415 aa)
	I1P5E0_ORYGL	Uncharacterized protein. (815 aa)
	I1NYC6_ORYGL	SPX domain-containing protein. (284 aa)
	I1NW44_ORYGL	Uncharacterized protein. (828 aa)
	I1NUT4_ORYGL	Uncharacterized protein. (1023 aa)
	I1NK44_ORYGL	Uncharacterized protein. (436 aa)
	I1NJW8_ORYGL	Uncharacterized protein; Belongs to the multicopper oxidase family. (636 aa)
	I1NJW7_ORYGL	Uncharacterized protein; Belongs to the multicopper oxidase family. (534 aa)
	I1NJW6_ORYGL	Uncharacterized protein. (596 aa)
	I1NJW4_ORYGL	Plastocyanin-like domain-containing protein. (595 aa)
	I1R8J2_ORYGL	WD_REPEATS_REGION domain-containing protein. (387 aa)
	I1R372_ORYGL	LNS2 domain-containing protein. (1315 aa)
	I1QWN3_ORYGL	Uncharacterized protein. (215 aa)
	I1QU51_ORYGL	SPX domain-containing protein. (274 aa)
	I1QGW0_ORYGL	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. (363 aa)
	I1Q866_ORYGL	GCK domain-containing protein. (191 aa)
	I1Q7B0_ORYGL	Uncharacterized protein. (479 aa)
	I1Q3G5_ORYGL	SPX domain-containing protein. (295 aa)
	I1PXU6_ORYGL	UBIQUITIN_CONJUGAT_2 domain-containing protein. (876 aa)
	I1PWD7_ORYGL	LNS2 domain-containing protein. (974 aa)
	I1PVH6_ORYGL	Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily. (1203 aa)
	I1NJW3_ORYGL	Uncharacterized protein; Belongs to the multicopper oxidase family. (582 aa)
	I1NJM3_ORYGL	Uncharacterized protein. (800 aa)
	I1PV82_ORYGL	Epimerase domain-containing protein. (479 aa)
	I1PPZ8_ORYGL	Uncharacterized protein. (562 aa)
	I1PGZ1_ORYGL	SPX domain-containing protein. (320 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NJM3_ORYGL	I1PXU6_ORYGL	I1NJM3	I1PXU6	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.433
I1NK44_ORYGL	I1P9S8_ORYGL	I1NK44	I1P9S8	Uncharacterized protein.	Uncharacterized protein.	0.926
I1NK44_ORYGL	I1PV82_ORYGL	I1NK44	I1PV82	Uncharacterized protein.	Epimerase domain-containing protein.	0.960
I1NK44_ORYGL	I1PWD7_ORYGL	I1NK44	I1PWD7	Uncharacterized protein.	LNS2 domain-containing protein.	0.916
I1NK44_ORYGL	I1Q7B0_ORYGL	I1NK44	I1Q7B0	Uncharacterized protein.	Uncharacterized protein.	0.926
I1NK44_ORYGL	I1R372_ORYGL	I1NK44	I1R372	Uncharacterized protein.	LNS2 domain-containing protein.	0.865
I1NW44_ORYGL	I1PXU6_ORYGL	I1NW44	I1PXU6	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.433
I1P5E0_ORYGL	I1PC55_ORYGL	I1P5E0	I1PC55	Uncharacterized protein.	SPX domain-containing protein.	0.402
I1P5E0_ORYGL	I1PGZ1_ORYGL	I1P5E0	I1PGZ1	Uncharacterized protein.	SPX domain-containing protein.	0.432
I1P5E0_ORYGL	I1PV82_ORYGL	I1P5E0	I1PV82	Uncharacterized protein.	Epimerase domain-containing protein.	0.424
I1P5E0_ORYGL	I1PXU6_ORYGL	I1P5E0	I1PXU6	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.553
I1P5E0_ORYGL	I1Q7B0_ORYGL	I1P5E0	I1Q7B0	Uncharacterized protein.	Uncharacterized protein.	0.416
I1P5E0_ORYGL	I1QU51_ORYGL	I1P5E0	I1QU51	Uncharacterized protein.	SPX domain-containing protein.	0.402
I1P5E0_ORYGL	I1R8J2_ORYGL	I1P5E0	I1R8J2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.461
I1P9S8_ORYGL	I1NK44_ORYGL	I1P9S8	I1NK44	Uncharacterized protein.	Uncharacterized protein.	0.926
I1P9S8_ORYGL	I1PV82_ORYGL	I1P9S8	I1PV82	Uncharacterized protein.	Epimerase domain-containing protein.	0.960
I1P9S8_ORYGL	I1PWD7_ORYGL	I1P9S8	I1PWD7	Uncharacterized protein.	LNS2 domain-containing protein.	0.866
I1P9S8_ORYGL	I1Q7B0_ORYGL	I1P9S8	I1Q7B0	Uncharacterized protein.	Uncharacterized protein.	0.926
I1P9S8_ORYGL	I1R372_ORYGL	I1P9S8	I1R372	Uncharacterized protein.	LNS2 domain-containing protein.	0.865
I1PC55_ORYGL	I1P5E0_ORYGL	I1PC55	I1P5E0	SPX domain-containing protein.	Uncharacterized protein.	0.402