(15 nodes) RNA polymerase II general transcription initiation factor activity network (Oryza glaberrima)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1NQ53_ORYGL	TAFII55_N domain-containing protein. (176 aa)
	I1R916_ORYGL	Uncharacterized protein. (208 aa)
	I1QUS5_ORYGL	Uncharacterized protein. (223 aa)
	I1QT32_ORYGL	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (532 aa)
	I1QP25_ORYGL	Uncharacterized protein. (290 aa)
	I1QEH5_ORYGL	Uncharacterized protein. (132 aa)
	I1Q6T7_ORYGL	Uncharacterized protein. (123 aa)
	I1Q430_ORYGL	Uncharacterized protein. (1823 aa)
	I1PUN4_ORYGL	TAFII55_N domain-containing protein. (200 aa)
	I1PT75_ORYGL	Uncharacterized protein. (142 aa)
	I1PRR7_ORYGL	Uncharacterized protein. (70 aa)
	I1PJ03_ORYGL	Uncharacterized protein. (97 aa)
	I1PE07_ORYGL	Uncharacterized protein. (203 aa)
	I1P9J3_ORYGL	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (527 aa)
	I1NNI4_ORYGL	TAF domain-containing protein. (541 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NNI4_ORYGL	I1NQ53_ORYGL	I1NNI4	I1NQ53	TAF domain-containing protein.	TAFII55_N domain-containing protein.	0.994
I1NNI4_ORYGL	I1P9J3_ORYGL	I1NNI4	I1P9J3	TAF domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.934
I1NNI4_ORYGL	I1PE07_ORYGL	I1NNI4	I1PE07	TAF domain-containing protein.	Uncharacterized protein.	0.966
I1NNI4_ORYGL	I1PJ03_ORYGL	I1NNI4	I1PJ03	TAF domain-containing protein.	Uncharacterized protein.	0.966
I1NNI4_ORYGL	I1PUN4_ORYGL	I1NNI4	I1PUN4	TAF domain-containing protein.	TAFII55_N domain-containing protein.	0.994
I1NNI4_ORYGL	I1Q430_ORYGL	I1NNI4	I1Q430	TAF domain-containing protein.	Uncharacterized protein.	0.999
I1NNI4_ORYGL	I1Q6T7_ORYGL	I1NNI4	I1Q6T7	TAF domain-containing protein.	Uncharacterized protein.	0.966
I1NNI4_ORYGL	I1QP25_ORYGL	I1NNI4	I1QP25	TAF domain-containing protein.	Uncharacterized protein.	0.966
I1NNI4_ORYGL	I1QT32_ORYGL	I1NNI4	I1QT32	TAF domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.934
I1NNI4_ORYGL	I1QUS5_ORYGL	I1NNI4	I1QUS5	TAF domain-containing protein.	Uncharacterized protein.	0.966
I1NNI4_ORYGL	I1R916_ORYGL	I1NNI4	I1R916	TAF domain-containing protein.	Uncharacterized protein.	0.966
I1NQ53_ORYGL	I1NNI4_ORYGL	I1NQ53	I1NNI4	TAFII55_N domain-containing protein.	TAF domain-containing protein.	0.994
I1NQ53_ORYGL	I1P9J3_ORYGL	I1NQ53	I1P9J3	TAFII55_N domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.891
I1NQ53_ORYGL	I1PE07_ORYGL	I1NQ53	I1PE07	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.927
I1NQ53_ORYGL	I1PJ03_ORYGL	I1NQ53	I1PJ03	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.927
I1NQ53_ORYGL	I1Q430_ORYGL	I1NQ53	I1Q430	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.994
I1NQ53_ORYGL	I1Q6T7_ORYGL	I1NQ53	I1Q6T7	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.927
I1NQ53_ORYGL	I1QP25_ORYGL	I1NQ53	I1QP25	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.927
I1NQ53_ORYGL	I1QT32_ORYGL	I1NQ53	I1QT32	TAFII55_N domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.891
I1NQ53_ORYGL	I1QUS5_ORYGL	I1NQ53	I1QUS5	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.927