(50 nodes) Stem cell population maintenance network (Oryza glaberrima)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1QXW0_ORYGL	BHLH domain-containing protein. (425 aa)
	I1R127_ORYGL	Uncharacterized protein; Belongs to the peptidase C19 family. (1120 aa)
	I1R156_ORYGL	RING-type domain-containing protein. (1021 aa)
	I1R1R7_ORYGL	PHD_Oberon domain-containing protein. (523 aa)
	I1R4A0_ORYGL	BHLH domain-containing protein. (880 aa)
	I1R6P8_ORYGL	OBERON-like protein; Probable transcription factor. (622 aa)
	I1R6G6_ORYGL	Uncharacterized protein; Belongs to the peptidase C19 family. (1126 aa)
	I1NLL7_ORYGL	Glycosyltransferase family 92 protein; Belongs to the glycosyltransferase 92 family. (507 aa)
	I1NN68_ORYGL	CP-type G domain-containing protein. (591 aa)
	I1NNP7_ORYGL	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1218 aa)
	I1NRZ8_ORYGL	Uncharacterized protein. (311 aa)
	I1NS12_ORYGL	Uncharacterized protein; Belongs to the peptidase C19 family. (1110 aa)
	I1NSD9_ORYGL	RING-type domain-containing protein. (477 aa)
	I1NTC1_ORYGL	Homeobox domain-containing protein. (612 aa)
	I1NTN0_ORYGL	BHLH domain-containing protein. (904 aa)
	I1NUU0_ORYGL	Protein kinase domain-containing protein. (349 aa)
	I1NXX7_ORYGL	Uncharacterized protein. (232 aa)
	I1P1Z4_ORYGL	Uncharacterized protein. (668 aa)
	I1P3A2_ORYGL	PPM-type phosphatase domain-containing protein. (596 aa)
	I1P3B0_ORYGL	Uncharacterized protein. (258 aa)
	I1P3E2_ORYGL	Uncharacterized protein. (413 aa)
	I1P5A2_ORYGL	Uncharacterized protein. (295 aa)
	I1PCE1_ORYGL	USP7_ICP0_bdg domain-containing protein. (135 aa)
	I1PCQ3_ORYGL	Uncharacterized protein; Belongs to the argonaute family. (1048 aa)
	I1PGF5_ORYGL	Uncharacterized protein. (97 aa)
	I1PGF9_ORYGL	DUF3883 domain-containing protein. (2652 aa)
	I1PHH6_ORYGL	Uncharacterized protein. (328 aa)
	I1PMX4_ORYGL	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1657 aa)
	I1PP86_ORYGL	Uncharacterized protein. (249 aa)
	I1PRE9_ORYGL	Protein kinase domain-containing protein. (313 aa)
	I1PSD9_ORYGL	Uncharacterized protein. (1130 aa)
	I1PW88_ORYGL	Homeobox domain-containing protein. (576 aa)
	I1PWY0_ORYGL	Uncharacterized protein. (514 aa)
	I1PX70_ORYGL	Uncharacterized protein. (120 aa)
	I1PYK6_ORYGL	Protein kinase domain-containing protein. (1034 aa)
	I1PZP6_ORYGL	Uncharacterized protein. (545 aa)
	I1Q238_ORYGL	Protein kinase domain-containing protein. (478 aa)
	I1Q3A5_ORYGL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (1072 aa)
	I1Q3E4_ORYGL	Uncharacterized protein; Belongs to the argonaute family. (978 aa)
	I1Q3Q9_ORYGL	Uncharacterized protein. (255 aa)
	I1Q4E9_ORYGL	F-box domain-containing protein. (410 aa)
	I1Q877_ORYGL	Uncharacterized protein. (124 aa)
	I1Q8A2_ORYGL	Uncharacterized protein; Belongs to the peptidase C19 family. (1188 aa)
	I1QE74_ORYGL	MATH domain-containing protein. (132 aa)
	I1QIZ3_ORYGL	Uncharacterized protein. (111 aa)
	I1QJR8_ORYGL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (705 aa)
	I1QNX7_ORYGL	DRBM domain-containing protein. (188 aa)
	I1QPU1_ORYGL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (1117 aa)
	I1QW76_ORYGL	Uncharacterized protein. (285 aa)
	I1QXV9_ORYGL	bHLH-MYC_N domain-containing protein. (332 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NN68_ORYGL	I1P5A2_ORYGL	I1NN68	I1P5A2	CP-type G domain-containing protein.	Uncharacterized protein.	0.810
I1NNP7_ORYGL	I1PCQ3_ORYGL	I1NNP7	I1PCQ3	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	Uncharacterized protein; Belongs to the argonaute family.	0.475
I1NNP7_ORYGL	I1PMX4_ORYGL	I1NNP7	I1PMX4	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.562
I1NNP7_ORYGL	I1QNX7_ORYGL	I1NNP7	I1QNX7	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	DRBM domain-containing protein.	0.562
I1NRZ8_ORYGL	I1R4A0_ORYGL	I1NRZ8	I1R4A0	Uncharacterized protein.	BHLH domain-containing protein.	0.453
I1NUU0_ORYGL	I1P1Z4_ORYGL	I1NUU0	I1P1Z4	Protein kinase domain-containing protein.	Uncharacterized protein.	0.806
I1NXX7_ORYGL	I1QJR8_ORYGL	I1NXX7	I1QJR8	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.406
I1P1Z4_ORYGL	I1NUU0_ORYGL	I1P1Z4	I1NUU0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.806
I1P1Z4_ORYGL	I1P3A2_ORYGL	I1P1Z4	I1P3A2	Uncharacterized protein.	PPM-type phosphatase domain-containing protein.	0.467
I1P1Z4_ORYGL	I1PRE9_ORYGL	I1P1Z4	I1PRE9	Uncharacterized protein.	Protein kinase domain-containing protein.	0.806
I1P1Z4_ORYGL	I1PX70_ORYGL	I1P1Z4	I1PX70	Uncharacterized protein.	Uncharacterized protein.	0.465
I1P1Z4_ORYGL	I1QIZ3_ORYGL	I1P1Z4	I1QIZ3	Uncharacterized protein.	Uncharacterized protein.	0.426
I1P3A2_ORYGL	I1P1Z4_ORYGL	I1P3A2	I1P1Z4	PPM-type phosphatase domain-containing protein.	Uncharacterized protein.	0.467
I1P5A2_ORYGL	I1NN68_ORYGL	I1P5A2	I1NN68	Uncharacterized protein.	CP-type G domain-containing protein.	0.810
I1PCQ3_ORYGL	I1NNP7_ORYGL	I1PCQ3	I1NNP7	Uncharacterized protein; Belongs to the argonaute family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.475
I1PCQ3_ORYGL	I1PMX4_ORYGL	I1PCQ3	I1PMX4	Uncharacterized protein; Belongs to the argonaute family.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.816
I1PCQ3_ORYGL	I1QNX7_ORYGL	I1PCQ3	I1QNX7	Uncharacterized protein; Belongs to the argonaute family.	DRBM domain-containing protein.	0.755
I1PGF5_ORYGL	I1PX70_ORYGL	I1PGF5	I1PX70	Uncharacterized protein.	Uncharacterized protein.	0.422
I1PGF5_ORYGL	I1QIZ3_ORYGL	I1PGF5	I1QIZ3	Uncharacterized protein.	Uncharacterized protein.	0.433
I1PMX4_ORYGL	I1NNP7_ORYGL	I1PMX4	I1NNP7	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.562