(156 nodes) rRNA binding network (Oryza glaberrima)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1Q5N1_ORYGL	Uncharacterized protein. (102 aa)
	rpl22	Ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family. (149 aa)
	G2XLD3_ORYGL	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (320 aa)
	I1NKX1_ORYGL	Uncharacterized protein. (623 aa)
	I1NLC6_ORYGL	Uncharacterized protein. (126 aa)
	I1NLX1_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (319 aa)
	I1NM04_ORYGL	Uncharacterized protein. (114 aa)
	I1R8G3_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	I1R8D9_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (109 aa)
	I1R7W2_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (170 aa)
	I1R789_ORYGL	Uncharacterized protein. (318 aa)
	I1R6U5_ORYGL	Ribosomal_L2_C domain-containing protein. (165 aa)
	I1R6U4_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (88 aa)
	I1R6L2_ORYGL	Uncharacterized protein. (167 aa)
	I1R5X3_ORYGL	Epimerase domain-containing protein. (376 aa)
	I1R5R1_ORYGL	Uncharacterized protein. (117 aa)
	I1R5N1_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (178 aa)
	I1R5J8_ORYGL	Uncharacterized protein. (998 aa)
	I1R3Y7_ORYGL	Uncharacterized protein. (593 aa)
	I1R204_ORYGL	Uncharacterized protein. (286 aa)
	I1R203_ORYGL	Uncharacterized protein. (277 aa)
	I1R0W5_ORYGL	Uncharacterized protein. (131 aa)
	I1QZ89_ORYGL	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (136 aa)
	I1QXN4_ORYGL	Uncharacterized protein. (492 aa)
	I1QXF0_ORYGL	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (320 aa)
	OrsajCp071	Ribosomal protein L23; Belongs to the universal ribosomal protein uL23 family. (93 aa)
	I1QWJ9_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL23 family. (92 aa)
	I1NMW6_ORYGL	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (152 aa)
	I1NN05_ORYGL	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (265 aa)
	I1NNK5_ORYGL	Brix domain-containing protein. (310 aa)
	I1NPL1_ORYGL	Uncharacterized protein. (257 aa)
	I1NPY5_ORYGL	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. (135 aa)
	I1NQM9_ORYGL	Uncharacterized protein. (196 aa)
	I1NRG8_ORYGL	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (122 aa)
	I1NS50_ORYGL	Uncharacterized protein. (369 aa)
	I1NU93_ORYGL	Ribosomal_L18_c domain-containing protein. (315 aa)
	I1NU94_ORYGL	Ribosomal_L18_c domain-containing protein. (230 aa)
	I1NWC2_ORYGL	Uncharacterized protein. (192 aa)
	I1NWE0_ORYGL	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (255 aa)
	I1NWH7_ORYGL	Ribosomal protein L37; Binds to the 23S rRNA. (94 aa)
	I1NWJ8_ORYGL	S1 motif domain-containing protein. (799 aa)
	I1NWK1_ORYGL	Uncharacterized protein. (379 aa)
	I1NX32_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (270 aa)
	I1NXI4_ORYGL	Uncharacterized protein. (199 aa)
	I1NYU0_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (182 aa)
	I1NZ55_ORYGL	Uncharacterized protein. (214 aa)
	I1NZJ1_ORYGL	Uncharacterized protein. (284 aa)
	I1NZP5_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (71 aa)
	I1NZU1_ORYGL	Uncharacterized protein. (71 aa)
	I1NZX0_ORYGL	Uncharacterized protein. (279 aa)
	I1P1Q9_ORYGL	Brix domain-containing protein. (331 aa)
	I1P2P2_ORYGL	Uncharacterized protein. (230 aa)
	I1P396_ORYGL	Uncharacterized protein. (181 aa)
	I1P3D2_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (166 aa)
	I1P5H5_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	I1P5H8_ORYGL	Ribosomal protein L37; Binds to the 23S rRNA. (95 aa)
	I1P5P0_ORYGL	RIBOSOMAL_L9 domain-containing protein. (187 aa)
	I1P5Y6_ORYGL	Uncharacterized protein. (113 aa)
	I1P6R2_ORYGL	Uncharacterized protein. (572 aa)
	I1P706_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (210 aa)
	I1P727_ORYGL	Uncharacterized protein. (279 aa)
	I1P7P8_ORYGL	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (195 aa)
	I1P7Z9_ORYGL	Uncharacterized protein. (175 aa)
	I1P9T1_ORYGL	Uncharacterized protein. (324 aa)
	I1PA64_ORYGL	Uncharacterized protein. (220 aa)
	I1PAP0_ORYGL	Uncharacterized protein. (501 aa)
	I1PB78_ORYGL	Brix domain-containing protein. (360 aa)
	I1PBD9_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family. (226 aa)
	I1PBS8_ORYGL	Uncharacterized protein. (113 aa)
	I1PBT1_ORYGL	Uncharacterized protein. (124 aa)
	I1PBV6_ORYGL	Uncharacterized protein. (295 aa)
	I1PCC0_ORYGL	Uncharacterized protein. (120 aa)
	I1PCP0_ORYGL	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (326 aa)
	OrsajCp066	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (239 aa)
	I1QWE8_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (51 aa)
	I1QWE7_ORYGL	Uncharacterized protein. (137 aa)
	I1QVM6_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (71 aa)
	I1QV92_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (155 aa)
	I1QRU6_ORYGL	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa)
	I1QR16_ORYGL	Uncharacterized protein. (224 aa)
	I1QPZ1_ORYGL	Uncharacterized protein. (190 aa)
	I1QNC6_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (123 aa)
	I1QNC5_ORYGL	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (136 aa)
	I1QNC4_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (149 aa)
	I1QNC2_ORYGL	Uncharacterized protein. (137 aa)
	I1QKX2_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (92 aa)
	I1QKW4_ORYGL	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (136 aa)
	I1QKV5_ORYGL	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa)
	I1QJK6_ORYGL	Ribosomal_L6 domain-containing protein; Belongs to the universal ribosomal protein uL6 family. (103 aa)
	I1QI26_ORYGL	Uncharacterized protein. (107 aa)
	I1QGJ6_ORYGL	Uncharacterized protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family. (437 aa)
	I1QGJ2_ORYGL	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (159 aa)
	I1QFR8_ORYGL	Brix domain-containing protein. (293 aa)
	I1QFB4_ORYGL	Ribosomal protein L37; Binds to the 23S rRNA. (94 aa)
	I1QF58_ORYGL	Ribosomal_S13_N domain-containing protein. (142 aa)
	I1QF57_ORYGL	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	I1QEG9_ORYGL	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	I1QDJ9_ORYGL	Uncharacterized protein. (323 aa)
	I1QD95_ORYGL	Uncharacterized protein. (1315 aa)
	I1QCF9_ORYGL	S4 RNA-binding domain-containing protein. (173 aa)
	I1QA95_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (95 aa)
	I1Q912_ORYGL	Epimerase domain-containing protein. (392 aa)
	I1Q6Z4_ORYGL	Ribosomal_S7 domain-containing protein. (132 aa)
	OrsajCp050	Ribosomal protein S18; Belongs to the bacterial ribosomal protein bS18 family. (163 aa)
	OrsajCp064	Ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family. (123 aa)
	I1Q664_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (71 aa)
	OrsajCp076	Ribosomal protein S7; Belongs to the universal ribosomal protein uS7 family. (156 aa)
	OrsajCp023	Ribosomal protein S14. (103 aa)
	I1Q637_ORYGL	S1-like domain-containing protein. (102 aa)
	OrsajCp063	Ribosomal protein S8; Belongs to the universal ribosomal protein uS8 family. (136 aa)
	I1PDG1_ORYGL	Ribosomal_TL5_C domain-containing protein. (204 aa)
	I1PDU5_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family. (136 aa)
	I1PDU6_ORYGL	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (136 aa)
	I1PE52_ORYGL	Uncharacterized protein. (232 aa)
	I1PEJ8_ORYGL	Uncharacterized protein. (114 aa)
	I1PET6_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (171 aa)
	I1PFJ4_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family. (226 aa)
	I1PFV8_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (223 aa)
	I1PGZ6_ORYGL	Uncharacterized protein. (170 aa)
	I1PH85_ORYGL	Uncharacterized protein. (184 aa)
	I1PH95_ORYGL	Uncharacterized protein. (219 aa)
	I1PHC2_ORYGL	Uncharacterized protein. (585 aa)
	I1PHK0_ORYGL	Smr domain-containing protein. (641 aa)
	I1PI64_ORYGL	Ribosomal_L6 domain-containing protein; Belongs to the universal ribosomal protein uL6 family. (103 aa)
	I1PKN3_ORYGL	Ribosomal protein S7; Belongs to the universal ribosomal protein uS7 family. (156 aa)
	I1PKN4_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (92 aa)
	I1PL30_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	I1PMR2_ORYGL	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (152 aa)
	I1PMS2_ORYGL	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (160 aa)
	I1PPC6_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (166 aa)
	I1PPU8_ORYGL	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (170 aa)
	I1PPU9_ORYGL	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (161 aa)
	I1PQJ9_ORYGL	S4 RNA-binding domain-containing protein. (182 aa)
	I1PR37_ORYGL	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (331 aa)
	I1PS04_ORYGL	Uncharacterized protein. (380 aa)
	I1PSD8_ORYGL	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (385 aa)
	I1PSK1_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (114 aa)
	I1PT90_ORYGL	Uncharacterized protein. (156 aa)
	I1PTX0_ORYGL	Ribosomal_TL5_C domain-containing protein. (265 aa)
	I1PU50_ORYGL	Uncharacterized protein. (664 aa)
	I1PUC9_ORYGL	RNase III domain-containing protein. (247 aa)
	I1PUZ1_ORYGL	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (263 aa)
	I1PV89_ORYGL	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (359 aa)
	I1PVC4_ORYGL	Uncharacterized protein. (324 aa)
	I1PVI6_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (123 aa)
	I1PVI7_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family. (136 aa)
	I1PX32_ORYGL	Brix domain-containing protein. (309 aa)
	I1PY10_ORYGL	Uncharacterized protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family. (405 aa)
	I1PZC6_ORYGL	Brix domain-containing protein. (393 aa)
	I1PZF4_ORYGL	Uncharacterized protein. (679 aa)
	OrsajCp027	Ribosomal protein S4; Belongs to the universal ribosomal protein uS4 family. (201 aa)
	I1Q2G4_ORYGL	G domain-containing protein. (681 aa)
	I1Q2J2_ORYGL	Uncharacterized protein. (143 aa)
	I1Q2Z1_ORYGL	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (181 aa)
	OrsajCp051	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa)
	I1Q5Q4_ORYGL	Ribosomal_S3_C domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (240 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G2XLD3_ORYGL	I1NKX1_ORYGL	G2XLD3	I1NKX1	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.435
G2XLD3_ORYGL	I1NLC6_ORYGL	G2XLD3	I1NLC6	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.989
G2XLD3_ORYGL	I1NLX1_ORYGL	G2XLD3	I1NLX1	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.983
G2XLD3_ORYGL	I1NMW6_ORYGL	G2XLD3	I1NMW6	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.996
G2XLD3_ORYGL	I1NN05_ORYGL	G2XLD3	I1NN05	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.955
G2XLD3_ORYGL	I1NNK5_ORYGL	G2XLD3	I1NNK5	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Brix domain-containing protein.	0.957
G2XLD3_ORYGL	I1NPY5_ORYGL	G2XLD3	I1NPY5	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	0.983
G2XLD3_ORYGL	I1NQM9_ORYGL	G2XLD3	I1NQM9	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.639
G2XLD3_ORYGL	I1NRG8_ORYGL	G2XLD3	I1NRG8	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.953
G2XLD3_ORYGL	I1NS50_ORYGL	G2XLD3	I1NS50	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.625
G2XLD3_ORYGL	I1NWC2_ORYGL	G2XLD3	I1NWC2	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.996
G2XLD3_ORYGL	I1NWE0_ORYGL	G2XLD3	I1NWE0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.955
G2XLD3_ORYGL	I1NWH7_ORYGL	G2XLD3	I1NWH7	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Ribosomal protein L37; Binds to the 23S rRNA.	0.987
G2XLD3_ORYGL	I1NX32_ORYGL	G2XLD3	I1NX32	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.983
G2XLD3_ORYGL	I1NXI4_ORYGL	G2XLD3	I1NXI4	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.960
G2XLD3_ORYGL	I1NYU0_ORYGL	G2XLD3	I1NYU0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.994
G2XLD3_ORYGL	I1NZ55_ORYGL	G2XLD3	I1NZ55	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.973
G2XLD3_ORYGL	I1NZJ1_ORYGL	G2XLD3	I1NZJ1	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.500
G2XLD3_ORYGL	I1NZP5_ORYGL	G2XLD3	I1NZP5	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.504
G2XLD3_ORYGL	I1P1Q9_ORYGL	G2XLD3	I1P1Q9	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Brix domain-containing protein.	0.968