(58 nodes) Structural constituent of chromatin network (Oryza glaberrima)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1P1J0_ORYGL	Uncharacterized protein. (503 aa)
	I1P7H8_ORYGL	Uncharacterized protein. (273 aa)
	I1P3M5_ORYGL	Uncharacterized protein. (534 aa)
	I1P7U6_ORYGL	Histone H2A; Belongs to the histone H2A family. (138 aa)
	I1P8A0_ORYGL	Uncharacterized protein. (212 aa)
	I1P8D4_ORYGL	Uncharacterized protein. (477 aa)
	I1PA21_ORYGL	Histone H2B; Belongs to the histone H2B family. (416 aa)
	I1PBX5_ORYGL	Histone H3; Belongs to the histone H3 family. (136 aa)
	I1PFC8_ORYGL	Uncharacterized protein; Belongs to the histone H2A family. (331 aa)
	I1PGC0_ORYGL	H15 domain-containing protein. (293 aa)
	I1PI90_ORYGL	Histone H2A; Belongs to the histone H2A family. (137 aa)
	I1PJG4_ORYGL	Uncharacterized protein. (454 aa)
	I1PJN3_ORYGL	H15 domain-containing protein. (191 aa)
	I1PLR6_ORYGL	Uncharacterized protein. (532 aa)
	I1PNW7_ORYGL	HMG box domain-containing protein. (147 aa)
	I1PRV3_ORYGL	Uncharacterized protein. (458 aa)
	I1PRV7_ORYGL	Histone H2A; Belongs to the histone H2A family. (156 aa)
	I1PWD1_ORYGL	Histone H2A; Belongs to the histone H2A family. (163 aa)
	I1PWE3_ORYGL	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (99 aa)
	I1PXR6_ORYGL	Uncharacterized protein. (188 aa)
	I1PZ80_ORYGL	H15 domain-containing protein. (240 aa)
	I1QBD1_ORYGL	Histone H2A; Belongs to the histone H2A family. (136 aa)
	I1QBD2_ORYGL	Histone H2A; Belongs to the histone H2A family. (135 aa)
	I1QBF3_ORYGL	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	I1QBK8_ORYGL	Uncharacterized protein. (99 aa)
	I1QGG7_ORYGL	F-box domain-containing protein. (468 aa)
	I1QGG8_ORYGL	Uncharacterized protein. (110 aa)
	I1QHS7_ORYGL	Uncharacterized protein. (481 aa)
	I1QIT8_ORYGL	Histone H2A; Belongs to the histone H2A family. (135 aa)
	I1QJI7_ORYGL	Uncharacterized protein. (434 aa)
	I1QJP8_ORYGL	Uncharacterized protein. (157 aa)
	I1QJP9_ORYGL	Histone H2B; Belongs to the histone H2B family. (153 aa)
	I1QLK7_ORYGL	Uncharacterized protein. (211 aa)
	I1QQ03_ORYGL	Uncharacterized protein. (392 aa)
	I1QR29_ORYGL	HMG box domain-containing protein. (128 aa)
	I1QRH8_ORYGL	Histone domain-containing protein; Belongs to the histone H2B family. (198 aa)
	I1QRH9_ORYGL	Uncharacterized protein. (427 aa)
	I1QRT6_ORYGL	Uncharacterized protein. (440 aa)
	I1QU34_ORYGL	Uncharacterized protein. (195 aa)
	I1QUJ2_ORYGL	Histone H2A; Belongs to the histone H2A family. (139 aa)
	I1R5V7_ORYGL	Histone domain-containing protein. (136 aa)
	I1R5V8_ORYGL	Histone domain-containing protein. (136 aa)
	I1R633_ORYGL	Histone H2A; Belongs to the histone H2A family. (135 aa)
	I1R6T8_ORYGL	Histone H2A; Belongs to the histone H2A family. (140 aa)
	I1NKA4_ORYGL	F-box domain-containing protein. (261 aa)
	I1NKA5_ORYGL	Histone H2B; Belongs to the histone H2B family. (155 aa)
	I1NKA6_ORYGL	Histone H2B; Belongs to the histone H2B family. (95 aa)
	I1NKA8_ORYGL	Histone H2B; Belongs to the histone H2B family. (153 aa)
	I1NKA9_ORYGL	F-box domain-containing protein. (431 aa)
	I1NKB1_ORYGL	Histone H2B; Belongs to the histone H2B family. (153 aa)
	I1NKB3_ORYGL	Histone H2B; Belongs to the histone H2B family. (155 aa)
	I1NNE5_ORYGL	Histone H2A; Belongs to the histone H2A family. (159 aa)
	I1NNE7_ORYGL	Histone domain-containing protein; Belongs to the histone H2B family. (115 aa)
	I1NQQ8_ORYGL	Uncharacterized protein. (305 aa)
	I1NT61_ORYGL	Histone H2B; Belongs to the histone H2B family. (139 aa)
	I1NTN6_ORYGL	Histone H3; Belongs to the histone H3 family. (136 aa)
	I1P051_ORYGL	Histone domain-containing protein. (211 aa)
	I1P052_ORYGL	Histone domain-containing protein. (134 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NKA4_ORYGL	I1NNE5_ORYGL	I1NKA4	I1NNE5	F-box domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.667
I1NKA4_ORYGL	I1NTN6_ORYGL	I1NKA4	I1NTN6	F-box domain-containing protein.	Histone H3; Belongs to the histone H3 family.	0.616
I1NKA4_ORYGL	I1P051_ORYGL	I1NKA4	I1P051	F-box domain-containing protein.	Histone domain-containing protein.	0.621
I1NKA4_ORYGL	I1P052_ORYGL	I1NKA4	I1P052	F-box domain-containing protein.	Histone domain-containing protein.	0.621
I1NKA4_ORYGL	I1P1J0_ORYGL	I1NKA4	I1P1J0	F-box domain-containing protein.	Uncharacterized protein.	0.616
I1NKA4_ORYGL	I1P3M5_ORYGL	I1NKA4	I1P3M5	F-box domain-containing protein.	Uncharacterized protein.	0.606
I1NKA4_ORYGL	I1P7H8_ORYGL	I1NKA4	I1P7H8	F-box domain-containing protein.	Uncharacterized protein.	0.644
I1NKA4_ORYGL	I1P7U6_ORYGL	I1NKA4	I1P7U6	F-box domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.831
I1NKA4_ORYGL	I1P8A0_ORYGL	I1NKA4	I1P8A0	F-box domain-containing protein.	Uncharacterized protein.	0.644
I1NKA4_ORYGL	I1P8D4_ORYGL	I1NKA4	I1P8D4	F-box domain-containing protein.	Uncharacterized protein.	0.606
I1NKA4_ORYGL	I1PBX5_ORYGL	I1NKA4	I1PBX5	F-box domain-containing protein.	Histone H3; Belongs to the histone H3 family.	0.621
I1NKA4_ORYGL	I1PFC8_ORYGL	I1NKA4	I1PFC8	F-box domain-containing protein.	Uncharacterized protein; Belongs to the histone H2A family.	0.831
I1NKA4_ORYGL	I1PGC0_ORYGL	I1NKA4	I1PGC0	F-box domain-containing protein.	H15 domain-containing protein.	0.644
I1NKA4_ORYGL	I1PI90_ORYGL	I1NKA4	I1PI90	F-box domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.644
I1NKA4_ORYGL	I1PJG4_ORYGL	I1NKA4	I1PJG4	F-box domain-containing protein.	Uncharacterized protein.	0.667
I1NKA4_ORYGL	I1PJN3_ORYGL	I1NKA4	I1PJN3	F-box domain-containing protein.	H15 domain-containing protein.	0.529
I1NKA4_ORYGL	I1PLR6_ORYGL	I1NKA4	I1PLR6	F-box domain-containing protein.	Uncharacterized protein.	0.616
I1NKA4_ORYGL	I1PNW7_ORYGL	I1NKA4	I1PNW7	F-box domain-containing protein.	HMG box domain-containing protein.	0.473
I1NKA4_ORYGL	I1PRV3_ORYGL	I1NKA4	I1PRV3	F-box domain-containing protein.	Uncharacterized protein.	0.644
I1NKA4_ORYGL	I1PRV7_ORYGL	I1NKA4	I1PRV7	F-box domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.667