41 items (Oryza glaberrima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1QD04_ORYGL	Protein kinase domain-containing protein. (574 aa)
	I1NK67_ORYGL	TFIIS N-terminal domain-containing protein. (535 aa)
	I1NL73_ORYGL	Protein kinase domain-containing protein. (633 aa)
	I1NN26_ORYGL	Protein kinase domain-containing protein. (557 aa)
	I1NPS3_ORYGL	Uncharacterized protein. (646 aa)
	I1NVD2_ORYGL	Protein kinase domain-containing protein. (513 aa)
	I1NWZ7_ORYGL	Uncharacterized protein; Belongs to the cyclin family. (446 aa)
	I1NY60_ORYGL	Uncharacterized protein. (220 aa)
	I1NZ54_ORYGL	Uncharacterized protein. (631 aa)
	I1NZP1_ORYGL	Protein kinase domain-containing protein. (644 aa)
	I1P1C2_ORYGL	Protein kinase domain-containing protein. (725 aa)
	I1P4L8_ORYGL	Uncharacterized protein. (802 aa)
	I1P6R4_ORYGL	Uncharacterized protein. (637 aa)
	I1P9J3_ORYGL	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (527 aa)
	I1PBA7_ORYGL	Protein kinase domain-containing protein. (561 aa)
	I1PE45_ORYGL	CDC73_C domain-containing protein. (375 aa)
	I1PFM5_ORYGL	Uncharacterized protein. (608 aa)
	I1PK56_ORYGL	Uncharacterized protein. (1056 aa)
	I1PLW0_ORYGL	Uncharacterized protein. (723 aa)
	I1PRG5_ORYGL	Protein kinase domain-containing protein. (586 aa)
	I1PV98_ORYGL	Protein kinase domain-containing protein. (519 aa)
	I1PWW1_ORYGL	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1639 aa)
	I1Q0H6_ORYGL	Uncharacterized protein. (780 aa)
	I1Q2M7_ORYGL	Uncharacterized protein. (627 aa)
	I1Q5H2_ORYGL	Uncharacterized protein. (449 aa)
	I1Q6R3_ORYGL	Uncharacterized protein. (379 aa)
	I1Q7G5_ORYGL	Uncharacterized protein. (667 aa)
	I1QBW5_ORYGL	Protein kinase domain-containing protein. (779 aa)
	I1QCB8_ORYGL	Spt4 domain-containing protein. (146 aa)
	I1QF29_ORYGL	Protein kinase domain-containing protein. (748 aa)
	I1QMN8_ORYGL	Uncharacterized protein. (167 aa)
	I1QT32_ORYGL	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (532 aa)
	I1QWT7_ORYGL	Uncharacterized protein; Belongs to the cyclin family. (630 aa)
	I1QYW0_ORYGL	Protein kinase domain-containing protein. (579 aa)
	I1R4R4_ORYGL	Protein kinase domain-containing protein. (630 aa)
	I1R5Y5_ORYGL	Protein kinase domain-containing protein. (327 aa)
	I1R5Z8_ORYGL	Protein kinase domain-containing protein. (423 aa)
	I1R658_ORYGL	Uncharacterized protein. (1069 aa)
	I1R920_ORYGL	Uncharacterized protein. (683 aa)
	I1R930_ORYGL	Protein kinase domain-containing protein. (315 aa)
	I1R931_ORYGL	Uncharacterized protein. (97 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NK67_ORYGL	I1NPS3_ORYGL	I1NK67	I1NPS3	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.879
I1NK67_ORYGL	I1NZ54_ORYGL	I1NK67	I1NZ54	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.879
I1NK67_ORYGL	I1PE45_ORYGL	I1NK67	I1PE45	TFIIS N-terminal domain-containing protein.	CDC73_C domain-containing protein.	0.891
I1NK67_ORYGL	I1PFM5_ORYGL	I1NK67	I1PFM5	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.903
I1NK67_ORYGL	I1PK56_ORYGL	I1NK67	I1PK56	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.973
I1NK67_ORYGL	I1PLW0_ORYGL	I1NK67	I1PLW0	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.879
I1NK67_ORYGL	I1PWW1_ORYGL	I1NK67	I1PWW1	TFIIS N-terminal domain-containing protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.992
I1NK67_ORYGL	I1Q0H6_ORYGL	I1NK67	I1Q0H6	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.879
I1NK67_ORYGL	I1Q2M7_ORYGL	I1NK67	I1Q2M7	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.879
I1NK67_ORYGL	I1Q5H2_ORYGL	I1NK67	I1Q5H2	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.879
I1NK67_ORYGL	I1Q6R3_ORYGL	I1NK67	I1Q6R3	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.879
I1NK67_ORYGL	I1Q7G5_ORYGL	I1NK67	I1Q7G5	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.903
I1NK67_ORYGL	I1QCB8_ORYGL	I1NK67	I1QCB8	TFIIS N-terminal domain-containing protein.	Spt4 domain-containing protein.	0.950
I1NK67_ORYGL	I1QMN8_ORYGL	I1NK67	I1QMN8	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.992
I1NK67_ORYGL	I1R658_ORYGL	I1NK67	I1R658	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.973
I1NK67_ORYGL	I1R920_ORYGL	I1NK67	I1R920	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.903
I1NL73_ORYGL	I1NPS3_ORYGL	I1NL73	I1NPS3	Protein kinase domain-containing protein.	Uncharacterized protein.	0.649
I1NL73_ORYGL	I1NWZ7_ORYGL	I1NL73	I1NWZ7	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.874
I1NL73_ORYGL	I1NZ54_ORYGL	I1NL73	I1NZ54	Protein kinase domain-containing protein.	Uncharacterized protein.	0.649
I1NL73_ORYGL	I1PE45_ORYGL	I1NL73	I1PE45	Protein kinase domain-containing protein.	CDC73_C domain-containing protein.	0.517