(72 nodes) Regulation of small molecule metabolic process network (Oryza glaberrima)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1R7Y0_ORYGL	Uncharacterized protein. (365 aa)
	I1NJG8_ORYGL	J domain-containing protein. (190 aa)
	I1NJW0_ORYGL	Uncharacterized protein. (315 aa)
	I1NK54_ORYGL	Uncharacterized protein. (218 aa)
	I1NKS6_ORYGL	Aminotran_1_2 domain-containing protein. (394 aa)
	I1NPX4_ORYGL	TP_methylase domain-containing protein; Belongs to the precorrin methyltransferase family. (384 aa)
	I1NQM8_ORYGL	Uncharacterized protein. (761 aa)
	I1NS58_ORYGL	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase; Bifunctional inositol kinase that acts in concert with the IP6K kinases IP6K1, IP6K2 and IP6K3 to synthesize the diphosphate group-containing inositol pyrophosphates diphosphoinositol pentakisphosphate, PP-InsP5, and bis-diphosphoinositol tetrakisphosphate, (PP)2-InsP4. PP-InsP5 and (PP)2-InsP4, also respectively called InsP7 and InsP8, regulate a variety of cellular processes, including apoptosis, vesicle trafficking, cytoskeletal dynamics, exocytosis, insulin signaling and neutrophil activation. Phosphorylates [...] (1098 aa)
	I1NSM2_ORYGL	Uncharacterized protein. (431 aa)
	I1NST3_ORYGL	Uncharacterized protein. (328 aa)
	I1NWD1_ORYGL	CP-type G domain-containing protein. (547 aa)
	I1NWT6_ORYGL	Uncharacterized protein. (250 aa)
	I1NXT7_ORYGL	Uncharacterized protein. (634 aa)
	I1NYN6_ORYGL	Homeobox domain-containing protein. (539 aa)
	I1P0U5_ORYGL	Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress. (986 aa)
	I1P1D0_ORYGL	Uncharacterized protein. (653 aa)
	I1P627_ORYGL	Uncharacterized protein. (661 aa)
	I1P667_ORYGL	Tudor domain-containing protein. (198 aa)
	I1P8C1_ORYGL	Uncharacterized protein. (763 aa)
	I1P8F5_ORYGL	Protein phosphatase; Belongs to the PP2C family. (596 aa)
	I1P8R4_ORYGL	NTP_transferase domain-containing protein. (415 aa)
	I1P8S8_ORYGL	Uncharacterized protein. (391 aa)
	I1PAI1_ORYGL	Uncharacterized protein. (508 aa)
	I1PBM6_ORYGL	Protein-serine/threonine kinase. (365 aa)
	I1PCK2_ORYGL	Uncharacterized protein. (572 aa)
	I1PDX4_ORYGL	Uncharacterized protein. (362 aa)
	I1PER4_ORYGL	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase; Bifunctional inositol kinase that acts in concert with the IP6K kinases IP6K1, IP6K2 and IP6K3 to synthesize the diphosphate group-containing inositol pyrophosphates diphosphoinositol pentakisphosphate, PP-InsP5, and bis-diphosphoinositol tetrakisphosphate, (PP)2-InsP4. PP-InsP5 and (PP)2-InsP4, also respectively called InsP7 and InsP8, regulate a variety of cellular processes, including apoptosis, vesicle trafficking, cytoskeletal dynamics, exocytosis, insulin signaling and neutrophil activation. Phosphorylates [...] (1044 aa)
	I1PGF5_ORYGL	Uncharacterized protein. (97 aa)
	I1PGK7_ORYGL	Protein phosphatase; Belongs to the PP2C family. (481 aa)
	I1PGL9_ORYGL	Uncharacterized protein. (278 aa)
	I1PGW5_ORYGL	Uncharacterized protein. (291 aa)
	I1PHP8_ORYGL	G_PROTEIN_RECEP_F2_4 domain-containing protein. (321 aa)
	I1PKV9_ORYGL	Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress. (1055 aa)
	I1PLM1_ORYGL	Uncharacterized protein. (652 aa)
	I1PQ37_ORYGL	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (342 aa)
	I1PRK0_ORYGL	PPIP5K2_N domain-containing protein. (74 aa)
	I1PS75_ORYGL	Uncharacterized protein; Belongs to the P(II) protein family. (208 aa)
	I1PTK6_ORYGL	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2433 aa)
	I1PX27_ORYGL	TPR_REGION domain-containing protein. (299 aa)
	I1PX68_ORYGL	Uncharacterized protein. (987 aa)
	I1PXU3_ORYGL	MACPF domain-containing protein. (627 aa)
	I1PZP6_ORYGL	Uncharacterized protein. (545 aa)
	I1Q2J4_ORYGL	Uncharacterized protein. (2356 aa)
	I1Q2W0_ORYGL	Uncharacterized protein. (198 aa)
	I1Q5W8_ORYGL	Protein kinase domain-containing protein. (459 aa)
	I1Q868_ORYGL	Uncharacterized protein. (293 aa)
	I1Q8I2_ORYGL	Uncharacterized protein. (886 aa)
	I1QA74_ORYGL	Uncharacterized protein. (1884 aa)
	I1QAM9_ORYGL	J domain-containing protein. (269 aa)
	I1QD43_ORYGL	Uncharacterized protein. (321 aa)
	I1QET7_ORYGL	Protein-serine/threonine kinase. (374 aa)
	I1QI31_ORYGL	Uncharacterized protein. (520 aa)
	I1QKI3_ORYGL	KIX_2 domain-containing protein. (1320 aa)
	I1QMS6_ORYGL	Uncharacterized protein. (436 aa)
	I1QSN5_ORYGL	Uncharacterized protein. (482 aa)
	I1QTG8_ORYGL	Uncharacterized protein. (165 aa)
	I1QTV9_ORYGL	Protein phosphatase; Belongs to the PP2C family. (465 aa)
	I1QXA7_ORYGL	Uncharacterized protein. (445 aa)
	I1QXH5_ORYGL	Uncharacterized protein. (502 aa)
	I1QZ01_ORYGL	RRM domain-containing protein. (94 aa)
	I1R0F9_ORYGL	Uncharacterized protein. (158 aa)
	I1R190_ORYGL	Uncharacterized protein. (886 aa)
	I1R1Z3_ORYGL	Uncharacterized protein. (589 aa)
	I1R1Z5_ORYGL	Uncharacterized protein. (616 aa)
	I1R2X8_ORYGL	Uncharacterized protein. (675 aa)
	I1R3P8_ORYGL	Uncharacterized protein. (443 aa)
	I1R3U5_ORYGL	Uncharacterized protein. (506 aa)
	I1R5U1_ORYGL	Intron_maturas2 domain-containing protein. (708 aa)
	I1R747_ORYGL	Uncharacterized protein. (572 aa)
	I1R748_ORYGL	Uncharacterized protein. (534 aa)
	I1R750_ORYGL	Uncharacterized protein. (664 aa)
	I1R789_ORYGL	Uncharacterized protein. (318 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NJG8_ORYGL	I1QAM9_ORYGL	I1NJG8	I1QAM9	J domain-containing protein.	J domain-containing protein.	0.430
I1NK54_ORYGL	I1PBM6_ORYGL	I1NK54	I1PBM6	Uncharacterized protein.	Protein-serine/threonine kinase.	0.400
I1NK54_ORYGL	I1QET7_ORYGL	I1NK54	I1QET7	Uncharacterized protein.	Protein-serine/threonine kinase.	0.400
I1NKS6_ORYGL	I1PGL9_ORYGL	I1NKS6	I1PGL9	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.590
I1NPX4_ORYGL	I1PS75_ORYGL	I1NPX4	I1PS75	TP_methylase domain-containing protein; Belongs to the precorrin methyltransferase family.	Uncharacterized protein; Belongs to the P(II) protein family.	0.442
I1NS58_ORYGL	I1PER4_ORYGL	I1NS58	I1PER4	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase; Bifunctional inositol kinase that acts in concert with the IP6K kinases IP6K1, IP6K2 and IP6K3 to synthesize the diphosphate group-containing inositol pyrophosphates diphosphoinositol pentakisphosphate, PP-InsP5, and bis-diphosphoinositol tetrakisphosphate, (PP)2-InsP4. PP-InsP5 and (PP)2-InsP4, also respectively called InsP7 and InsP8, regulate a variety of cellular processes, including apoptosis, vesicle trafficking, cytoskeletal dynamics, exocytosis, insulin signaling and neutrophil activation. Phosphorylates [...]	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase; Bifunctional inositol kinase that acts in concert with the IP6K kinases IP6K1, IP6K2 and IP6K3 to synthesize the diphosphate group-containing inositol pyrophosphates diphosphoinositol pentakisphosphate, PP-InsP5, and bis-diphosphoinositol tetrakisphosphate, (PP)2-InsP4. PP-InsP5 and (PP)2-InsP4, also respectively called InsP7 and InsP8, regulate a variety of cellular processes, including apoptosis, vesicle trafficking, cytoskeletal dynamics, exocytosis, insulin signaling and neutrophil activation. Phosphorylates [...]	0.912
I1NSM2_ORYGL	I1NWT6_ORYGL	I1NSM2	I1NWT6	Uncharacterized protein.	Uncharacterized protein.	0.470
I1NWT6_ORYGL	I1NSM2_ORYGL	I1NWT6	I1NSM2	Uncharacterized protein.	Uncharacterized protein.	0.470
I1NWT6_ORYGL	I1QXA7_ORYGL	I1NWT6	I1QXA7	Uncharacterized protein.	Uncharacterized protein.	0.456
I1NWT6_ORYGL	I1R3P8_ORYGL	I1NWT6	I1R3P8	Uncharacterized protein.	Uncharacterized protein.	0.474
I1NXT7_ORYGL	I1PX27_ORYGL	I1NXT7	I1PX27	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.478
I1NXT7_ORYGL	I1R190_ORYGL	I1NXT7	I1R190	Uncharacterized protein.	Uncharacterized protein.	0.406
I1P1D0_ORYGL	I1PX27_ORYGL	I1P1D0	I1PX27	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.498
I1P627_ORYGL	I1P667_ORYGL	I1P627	I1P667	Uncharacterized protein.	Tudor domain-containing protein.	0.447
I1P667_ORYGL	I1P627_ORYGL	I1P667	I1P627	Tudor domain-containing protein.	Uncharacterized protein.	0.447
I1P8S8_ORYGL	I1QD43_ORYGL	I1P8S8	I1QD43	Uncharacterized protein.	Uncharacterized protein.	0.763
I1PBM6_ORYGL	I1NK54_ORYGL	I1PBM6	I1NK54	Protein-serine/threonine kinase.	Uncharacterized protein.	0.400
I1PBM6_ORYGL	I1PS75_ORYGL	I1PBM6	I1PS75	Protein-serine/threonine kinase.	Uncharacterized protein; Belongs to the P(II) protein family.	0.460
I1PBM6_ORYGL	I1PTK6_ORYGL	I1PBM6	I1PTK6	Protein-serine/threonine kinase.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.460
I1PER4_ORYGL	I1NS58_ORYGL	I1PER4	I1NS58	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase; Bifunctional inositol kinase that acts in concert with the IP6K kinases IP6K1, IP6K2 and IP6K3 to synthesize the diphosphate group-containing inositol pyrophosphates diphosphoinositol pentakisphosphate, PP-InsP5, and bis-diphosphoinositol tetrakisphosphate, (PP)2-InsP4. PP-InsP5 and (PP)2-InsP4, also respectively called InsP7 and InsP8, regulate a variety of cellular processes, including apoptosis, vesicle trafficking, cytoskeletal dynamics, exocytosis, insulin signaling and neutrophil activation. Phosphorylates [...]	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase; Bifunctional inositol kinase that acts in concert with the IP6K kinases IP6K1, IP6K2 and IP6K3 to synthesize the diphosphate group-containing inositol pyrophosphates diphosphoinositol pentakisphosphate, PP-InsP5, and bis-diphosphoinositol tetrakisphosphate, (PP)2-InsP4. PP-InsP5 and (PP)2-InsP4, also respectively called InsP7 and InsP8, regulate a variety of cellular processes, including apoptosis, vesicle trafficking, cytoskeletal dynamics, exocytosis, insulin signaling and neutrophil activation. Phosphorylates [...]	0.912