29 items (Oryza glaberrima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1PZ75_ORYGL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (997 aa)
	I1Q7X1_ORYGL	Uncharacterized protein. (164 aa)
	I1QCF0_ORYGL	Uncharacterized protein. (540 aa)
	I1QAJ5_ORYGL	Uncharacterized protein. (152 aa)
	I1QYA8_ORYGL	NAC domain-containing protein. (329 aa)
	I1NT34_ORYGL	ABC transporter domain-containing protein. (749 aa)
	I1NM70_ORYGL	Uncharacterized protein. (241 aa)
	I1NKT0_ORYGL	Uncharacterized protein. (168 aa)
	I1NK95_ORYGL	Uncharacterized protein. (547 aa)
	I1NU09_ORYGL	NAC domain-containing protein. (303 aa)
	I1NZX5_ORYGL	C2 domain-containing protein. (148 aa)
	I1P0V7_ORYGL	Uncharacterized protein; Belongs to the ClpA/ClpB family. (940 aa)
	I1P4H1_ORYGL	SKIP_SNW domain-containing protein. (607 aa)
	I1P797_ORYGL	NAC domain-containing protein. (316 aa)
	I1PA07_ORYGL	Uncharacterized protein. (539 aa)
	I1PL34_ORYGL	RRM domain-containing protein. (137 aa)
	I1PGP7_ORYGL	NAC domain-containing protein. (317 aa)
	I1PKX8_ORYGL	Uncharacterized protein; Belongs to the ClpA/ClpB family. (937 aa)
	I1PA44_ORYGL	ABC transporter domain-containing protein. (787 aa)
	I1PA45_ORYGL	ABC transporter domain-containing protein. (765 aa)
	I1PAV0_ORYGL	Uncharacterized protein. (344 aa)
	I1PFF4_ORYGL	Uncharacterized protein. (579 aa)
	I1PLX1_ORYGL	Uncharacterized protein. (734 aa)
	I1PNU3_ORYGL	Uncharacterized protein. (533 aa)
	I1PRZ4_ORYGL	ABC transporter domain-containing protein. (680 aa)
	I1PRZ6_ORYGL	ABC transporter domain-containing protein. (700 aa)
	I1PSX2_ORYGL	Serine/threonine protein phosphatase 2A regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (492 aa)
	I1PVR8_ORYGL	NAC domain-containing protein. (323 aa)
	I1PXS5_ORYGL	Serine/threonine protein phosphatase 2A regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (519 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NK95_ORYGL	I1NU09_ORYGL	I1NK95	I1NU09	Uncharacterized protein.	NAC domain-containing protein.	0.468
I1NK95_ORYGL	I1P797_ORYGL	I1NK95	I1P797	Uncharacterized protein.	NAC domain-containing protein.	0.468
I1NK95_ORYGL	I1PGP7_ORYGL	I1NK95	I1PGP7	Uncharacterized protein.	NAC domain-containing protein.	0.472
I1NK95_ORYGL	I1PVR8_ORYGL	I1NK95	I1PVR8	Uncharacterized protein.	NAC domain-containing protein.	0.482
I1NK95_ORYGL	I1Q7X1_ORYGL	I1NK95	I1Q7X1	Uncharacterized protein.	Uncharacterized protein.	0.425
I1NK95_ORYGL	I1QYA8_ORYGL	I1NK95	I1QYA8	Uncharacterized protein.	NAC domain-containing protein.	0.417
I1NU09_ORYGL	I1NK95_ORYGL	I1NU09	I1NK95	NAC domain-containing protein.	Uncharacterized protein.	0.468
I1NU09_ORYGL	I1Q7X1_ORYGL	I1NU09	I1Q7X1	NAC domain-containing protein.	Uncharacterized protein.	0.524
I1P797_ORYGL	I1NK95_ORYGL	I1P797	I1NK95	NAC domain-containing protein.	Uncharacterized protein.	0.468
I1P797_ORYGL	I1Q7X1_ORYGL	I1P797	I1Q7X1	NAC domain-containing protein.	Uncharacterized protein.	0.454
I1P797_ORYGL	I1QAJ5_ORYGL	I1P797	I1QAJ5	NAC domain-containing protein.	Uncharacterized protein.	0.409
I1PA07_ORYGL	I1PVR8_ORYGL	I1PA07	I1PVR8	Uncharacterized protein.	NAC domain-containing protein.	0.414
I1PGP7_ORYGL	I1NK95_ORYGL	I1PGP7	I1NK95	NAC domain-containing protein.	Uncharacterized protein.	0.472
I1PGP7_ORYGL	I1QYA8_ORYGL	I1PGP7	I1QYA8	NAC domain-containing protein.	NAC domain-containing protein.	0.453
I1PVR8_ORYGL	I1NK95_ORYGL	I1PVR8	I1NK95	NAC domain-containing protein.	Uncharacterized protein.	0.482
I1PVR8_ORYGL	I1PA07_ORYGL	I1PVR8	I1PA07	NAC domain-containing protein.	Uncharacterized protein.	0.414
I1PVR8_ORYGL	I1Q7X1_ORYGL	I1PVR8	I1Q7X1	NAC domain-containing protein.	Uncharacterized protein.	0.510
I1Q7X1_ORYGL	I1NK95_ORYGL	I1Q7X1	I1NK95	Uncharacterized protein.	Uncharacterized protein.	0.425
I1Q7X1_ORYGL	I1NU09_ORYGL	I1Q7X1	I1NU09	Uncharacterized protein.	NAC domain-containing protein.	0.524
I1Q7X1_ORYGL	I1P797_ORYGL	I1Q7X1	I1P797	Uncharacterized protein.	NAC domain-containing protein.	0.454