STRINGSTRING
I1P9R6_ORYGL I1P9R6_ORYGL I1NZ82_ORYGL I1NZ82_ORYGL I1PIC0_ORYGL I1PIC0_ORYGL I1QP08_ORYGL I1QP08_ORYGL I1QKH9_ORYGL I1QKH9_ORYGL I1Q0M3_ORYGL I1Q0M3_ORYGL I1NLX5_ORYGL I1NLX5_ORYGL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
I1P9R6_ORYGLMatrin-type domain-containing protein. (352 aa)
I1NZ82_ORYGLU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (228 aa)
I1PIC0_ORYGLMatrin-type domain-containing protein. (507 aa)
I1QP08_ORYGLMatrin-type domain-containing protein. (418 aa)
I1QKH9_ORYGLMatrin-type domain-containing protein. (124 aa)
I1Q0M3_ORYGLMatrin-type domain-containing protein. (243 aa)
I1NLX5_ORYGLC3H1-type domain-containing protein. (167 aa)
Your Current Organism:
Oryza glaberrima
NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.
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