29 items (Oryza glaberrima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1P1Q8_ORYGL	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (219 aa)
	I1PN10_ORYGL	Ribosomal_L14e domain-containing protein. (134 aa)
	I1P0U8_ORYGL	Uncharacterized protein. (211 aa)
	I1NZP6_ORYGL	Ribosomal_L2_C domain-containing protein. (155 aa)
	I1NZG3_ORYGL	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (137 aa)
	I1NYE7_ORYGL	Uncharacterized protein. (222 aa)
	I1NK33_ORYGL	KOW domain-containing protein. (157 aa)
	G2XMV6_ORYGL	Hypothetical_protein. (153 aa)
	G2XLL7_ORYGL	Hypothetical_protein. (150 aa)
	G2XLE5_ORYGL	Hypothetical_protein; Belongs to the universal ribosomal protein uL24 family. (159 aa)
	I1P2C0_ORYGL	Ribosomal_L14e domain-containing protein. (134 aa)
	I1R6U5_ORYGL	Ribosomal_L2_C domain-containing protein. (165 aa)
	I1R8W9_ORYGL	Eukaryotic translation initiation factor 5A. (160 aa)
	I1R953_ORYGL	Ribosomal_L2_C domain-containing protein. (261 aa)
	I1P2P2_ORYGL	Uncharacterized protein. (230 aa)
	I1Q0H6_ORYGL	Uncharacterized protein. (780 aa)
	I1Q7I5_ORYGL	Eukaryotic translation initiation factor 5A. (162 aa)
	I1P7F4_ORYGL	Uncharacterized protein. (164 aa)
	I1PFP6_ORYGL	Eukaryotic translation initiation factor 5A. (174 aa)
	I1PGI0_ORYGL	Uncharacterized protein. (260 aa)
	I1PGX7_ORYGL	Uncharacterized protein. (329 aa)
	I1Q996_ORYGL	eIF-5a domain-containing protein. (168 aa)
	I1QBW8_ORYGL	Eukaryotic translation initiation factor 5A. (160 aa)
	I1QV88_ORYGL	Uncharacterized protein. (164 aa)
	I1QVM7_ORYGL	Ribosomal_L2_C domain-containing protein. (135 aa)
	I1QW10_ORYGL	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
	I1R2M1_ORYGL	Uncharacterized protein. (229 aa)
	I1R3G2_ORYGL	Uncharacterized protein. (229 aa)
	I1PM65_ORYGL	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (222 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G2XLE5_ORYGL	I1NYE7_ORYGL	G2XLE5	I1NYE7	Hypothetical_protein; Belongs to the universal ribosomal protein uL24 family.	Uncharacterized protein.	0.901
G2XLE5_ORYGL	I1NZP6_ORYGL	G2XLE5	I1NZP6	Hypothetical_protein; Belongs to the universal ribosomal protein uL24 family.	Ribosomal_L2_C domain-containing protein.	0.453
G2XLE5_ORYGL	I1P0U8_ORYGL	G2XLE5	I1P0U8	Hypothetical_protein; Belongs to the universal ribosomal protein uL24 family.	Uncharacterized protein.	0.901
G2XLE5_ORYGL	I1P2P2_ORYGL	G2XLE5	I1P2P2	Hypothetical_protein; Belongs to the universal ribosomal protein uL24 family.	Uncharacterized protein.	0.507
G2XLE5_ORYGL	I1QVM7_ORYGL	G2XLE5	I1QVM7	Hypothetical_protein; Belongs to the universal ribosomal protein uL24 family.	Ribosomal_L2_C domain-containing protein.	0.453
G2XLE5_ORYGL	I1R6U5_ORYGL	G2XLE5	I1R6U5	Hypothetical_protein; Belongs to the universal ribosomal protein uL24 family.	Ribosomal_L2_C domain-containing protein.	0.453
G2XLL7_ORYGL	I1NYE7_ORYGL	G2XLL7	I1NYE7	Hypothetical_protein.	Uncharacterized protein.	0.973
G2XLL7_ORYGL	I1NZG3_ORYGL	G2XLL7	I1NZG3	Hypothetical_protein.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.995
G2XLL7_ORYGL	I1NZP6_ORYGL	G2XLL7	I1NZP6	Hypothetical_protein.	Ribosomal_L2_C domain-containing protein.	0.980
G2XLL7_ORYGL	I1P0U8_ORYGL	G2XLL7	I1P0U8	Hypothetical_protein.	Uncharacterized protein.	0.973
G2XLL7_ORYGL	I1P1Q8_ORYGL	G2XLL7	I1P1Q8	Hypothetical_protein.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.995
G2XLL7_ORYGL	I1P2C0_ORYGL	G2XLL7	I1P2C0	Hypothetical_protein.	Ribosomal_L14e domain-containing protein.	0.986
G2XLL7_ORYGL	I1P2P2_ORYGL	G2XLL7	I1P2P2	Hypothetical_protein.	Uncharacterized protein.	0.973
G2XLL7_ORYGL	I1P7F4_ORYGL	G2XLL7	I1P7F4	Hypothetical_protein.	Uncharacterized protein.	0.994
G2XLL7_ORYGL	I1PFP6_ORYGL	G2XLL7	I1PFP6	Hypothetical_protein.	Eukaryotic translation initiation factor 5A.	0.865
G2XLL7_ORYGL	I1PGI0_ORYGL	G2XLL7	I1PGI0	Hypothetical_protein.	Uncharacterized protein.	0.852
G2XLL7_ORYGL	I1PM65_ORYGL	G2XLL7	I1PM65	Hypothetical_protein.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.995
G2XLL7_ORYGL	I1PN10_ORYGL	G2XLL7	I1PN10	Hypothetical_protein.	Ribosomal_L14e domain-containing protein.	0.986
G2XLL7_ORYGL	I1Q7I5_ORYGL	G2XLL7	I1Q7I5	Hypothetical_protein.	Eukaryotic translation initiation factor 5A.	0.865
G2XLL7_ORYGL	I1Q996_ORYGL	G2XLL7	I1Q996	Hypothetical_protein.	eIF-5a domain-containing protein.	0.865