40 items (Oryza glaberrima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1NLM1_ORYGL	Longin domain-containing protein. (65 aa)
	I1NNK4_ORYGL	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (180 aa)
	I1NR14_ORYGL	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (429 aa)
	I1NT23_ORYGL	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (521 aa)
	I1NT54_ORYGL	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (177 aa)
	I1NTN7_ORYGL	Uncharacterized protein; Belongs to the synaptobrevin family. (216 aa)
	I1NVI0_ORYGL	Uncharacterized protein; Belongs to the synaptobrevin family. (214 aa)
	I1P267_ORYGL	Uncharacterized protein. (135 aa)
	I1P3A4_ORYGL	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (438 aa)
	I1P599_ORYGL	Uncharacterized protein; Belongs to the synaptobrevin family. (226 aa)
	I1P7X2_ORYGL	Uncharacterized protein; Belongs to the synaptobrevin family. (223 aa)
	I1PG45_ORYGL	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (161 aa)
	I1PG89_ORYGL	Uncharacterized protein; Belongs to the synaptobrevin family. (218 aa)
	I1PGF3_ORYGL	Uncharacterized protein; Belongs to the synaptobrevin family. (220 aa)
	I1PGM3_ORYGL	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (162 aa)
	I1PHK1_ORYGL	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (147 aa)
	I1PHQ7_ORYGL	Uncharacterized protein; Belongs to the synaptobrevin family. (246 aa)
	I1PMT0_ORYGL	Uncharacterized protein. (220 aa)
	I1PV63_ORYGL	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (417 aa)
	I1PWC8_ORYGL	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (177 aa)
	I1PXK2_ORYGL	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (426 aa)
	I1PZM7_ORYGL	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (143 aa)
	I1PZY8_ORYGL	Uncharacterized protein; Belongs to the synaptobrevin family. (221 aa)
	I1Q0B6_ORYGL	Uncharacterized protein; Belongs to the synaptobrevin family. (218 aa)
	I1Q8S3_ORYGL	Uncharacterized protein; Belongs to the synaptobrevin family. (220 aa)
	I1Q9F7_ORYGL	Uncharacterized protein; Belongs to the synaptobrevin family. (248 aa)
	I1QC96_ORYGL	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (451 aa)
	I1QE22_ORYGL	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (143 aa)
	I1QF13_ORYGL	Uncharacterized protein. (277 aa)
	I1QHG9_ORYGL	Longin domain-containing protein; Belongs to the synaptobrevin family. (224 aa)
	I1QIE3_ORYGL	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (143 aa)
	I1QJI2_ORYGL	SRP54 domain-containing protein. (624 aa)
	I1QKD9_ORYGL	Uncharacterized protein; Belongs to the synaptobrevin family. (241 aa)
	I1QKL6_ORYGL	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (166 aa)
	I1QKN4_ORYGL	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. (647 aa)
	I1QQV7_ORYGL	Uncharacterized protein. (108 aa)
	I1QSP0_ORYGL	Uncharacterized protein; Belongs to the synaptobrevin family. (228 aa)
	I1QTV0_ORYGL	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (143 aa)
	I1R4W1_ORYGL	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)
	I1R899_ORYGL	Uncharacterized protein; Belongs to the synaptobrevin family. (219 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NLM1_ORYGL	I1NNK4_ORYGL	I1NLM1	I1NNK4	Longin domain-containing protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.696
I1NLM1_ORYGL	I1NT23_ORYGL	I1NLM1	I1NT23	Longin domain-containing protein.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.703
I1NLM1_ORYGL	I1NT54_ORYGL	I1NLM1	I1NT54	Longin domain-containing protein.	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	0.685
I1NLM1_ORYGL	I1NTN7_ORYGL	I1NLM1	I1NTN7	Longin domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.904
I1NLM1_ORYGL	I1NVI0_ORYGL	I1NLM1	I1NVI0	Longin domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.904
I1NLM1_ORYGL	I1P267_ORYGL	I1NLM1	I1P267	Longin domain-containing protein.	Uncharacterized protein.	0.596
I1NLM1_ORYGL	I1PMT0_ORYGL	I1NLM1	I1PMT0	Longin domain-containing protein.	Uncharacterized protein.	0.596
I1NLM1_ORYGL	I1PWC8_ORYGL	I1NLM1	I1PWC8	Longin domain-containing protein.	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	0.685
I1NLM1_ORYGL	I1PZM7_ORYGL	I1NLM1	I1PZM7	Longin domain-containing protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.556
I1NLM1_ORYGL	I1QE22_ORYGL	I1NLM1	I1QE22	Longin domain-containing protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.556
I1NLM1_ORYGL	I1QKN4_ORYGL	I1NLM1	I1QKN4	Longin domain-containing protein.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.	0.703
I1NLM1_ORYGL	I1QQV7_ORYGL	I1NLM1	I1QQV7	Longin domain-containing protein.	Uncharacterized protein.	0.556
I1NNK4_ORYGL	I1NLM1_ORYGL	I1NNK4	I1NLM1	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Longin domain-containing protein.	0.696
I1NNK4_ORYGL	I1NTN7_ORYGL	I1NNK4	I1NTN7	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.750
I1NNK4_ORYGL	I1NVI0_ORYGL	I1NNK4	I1NVI0	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.750
I1NNK4_ORYGL	I1P267_ORYGL	I1NNK4	I1P267	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Uncharacterized protein.	0.991
I1NNK4_ORYGL	I1PG89_ORYGL	I1NNK4	I1PG89	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.696
I1NNK4_ORYGL	I1PHQ7_ORYGL	I1NNK4	I1PHQ7	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.696
I1NNK4_ORYGL	I1PMT0_ORYGL	I1NNK4	I1PMT0	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Uncharacterized protein.	0.991
I1NNK4_ORYGL	I1PZM7_ORYGL	I1NNK4	I1PZM7	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.995