(5 nodes) Regulatory protein NPR, central domain network (Oryza glaberrima)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1NRZ1_ORYGL	Uncharacterized protein. (635 aa)
	I1NL33_ORYGL	Uncharacterized protein. (580 aa)
	I1NV82_ORYGL	Uncharacterized protein. (507 aa)
	I1PZ09_ORYGL	Uncharacterized protein. (585 aa)
	I1R3W2_ORYGL	Uncharacterized protein. (493 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NL33_ORYGL	I1NRZ1_ORYGL	I1NL33	I1NRZ1	Uncharacterized protein.	Uncharacterized protein.	0.950
I1NL33_ORYGL	I1PZ09_ORYGL	I1NL33	I1PZ09	Uncharacterized protein.	Uncharacterized protein.	0.966
I1NRZ1_ORYGL	I1NL33_ORYGL	I1NRZ1	I1NL33	Uncharacterized protein.	Uncharacterized protein.	0.950
I1NRZ1_ORYGL	I1NV82_ORYGL	I1NRZ1	I1NV82	Uncharacterized protein.	Uncharacterized protein.	0.555
I1NRZ1_ORYGL	I1PZ09_ORYGL	I1NRZ1	I1PZ09	Uncharacterized protein.	Uncharacterized protein.	0.927
I1NV82_ORYGL	I1NRZ1_ORYGL	I1NV82	I1NRZ1	Uncharacterized protein.	Uncharacterized protein.	0.555
I1PZ09_ORYGL	I1NL33_ORYGL	I1PZ09	I1NL33	Uncharacterized protein.	Uncharacterized protein.	0.966
I1PZ09_ORYGL	I1NRZ1_ORYGL	I1PZ09	I1NRZ1	Uncharacterized protein.	Uncharacterized protein.	0.927