(4 nodes) Granulin superfamily network (Oryza glaberrima)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1PQR8_ORYGL	Uncharacterized protein; Belongs to the peptidase C1 family. (466 aa)
	I1PX36_ORYGL	Uncharacterized protein; Belongs to the peptidase C1 family. (339 aa)
	I1PQB7_ORYGL	Uncharacterized protein; Belongs to the peptidase C1 family. (458 aa)
	I1PQS0_ORYGL	Uncharacterized protein; Belongs to the peptidase C1 family. (495 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1PQB7_ORYGL	I1PQR8_ORYGL	I1PQB7	I1PQR8	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.952
I1PQB7_ORYGL	I1PQS0_ORYGL	I1PQB7	I1PQS0	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.953
I1PQB7_ORYGL	I1PX36_ORYGL	I1PQB7	I1PX36	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.953
I1PQR8_ORYGL	I1PQB7_ORYGL	I1PQR8	I1PQB7	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.952
I1PQR8_ORYGL	I1PQS0_ORYGL	I1PQR8	I1PQS0	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.952
I1PQR8_ORYGL	I1PX36_ORYGL	I1PQR8	I1PX36	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.953
I1PQS0_ORYGL	I1PQB7_ORYGL	I1PQS0	I1PQB7	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.953
I1PQS0_ORYGL	I1PQR8_ORYGL	I1PQS0	I1PQR8	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.952
I1PQS0_ORYGL	I1PX36_ORYGL	I1PQS0	I1PX36	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.953
I1PX36_ORYGL	I1PQB7_ORYGL	I1PX36	I1PQB7	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.953
I1PX36_ORYGL	I1PQR8_ORYGL	I1PX36	I1PQR8	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.953
I1PX36_ORYGL	I1PQS0_ORYGL	I1PX36	I1PQS0	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.953