STRINGSTRING
I1P0N4_ORYGL I1P0N4_ORYGL I1P2H3_ORYGL I1P2H3_ORYGL I1P9C0_ORYGL I1P9C0_ORYGL I1PC76_ORYGL I1PC76_ORYGL I1PKN9_ORYGL I1PKN9_ORYGL I1PM45_ORYGL I1PM45_ORYGL I1PUA5_ORYGL I1PUA5_ORYGL LSM5 LSM5 LSM8 LSM8 I1Q2E8_ORYGL I1Q2E8_ORYGL I1Q8C3_ORYGL I1Q8C3_ORYGL I1QC32_ORYGL I1QC32_ORYGL I1QFN9_ORYGL I1QFN9_ORYGL I1QFR5_ORYGL I1QFR5_ORYGL I1R1W3_ORYGL I1R1W3_ORYGL I1NJN1_ORYGL I1NJN1_ORYGL LSM4 LSM4 LSM3 LSM3 I1NVK3_ORYGL I1NVK3_ORYGL I1NWB3_ORYGL I1NWB3_ORYGL I1NWU5_ORYGL I1NWU5_ORYGL I1NXT4_ORYGL I1NXT4_ORYGL I1P0F9_ORYGL I1P0F9_ORYGL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
I1P0N4_ORYGLSm domain-containing protein. (87 aa)
I1P2H3_ORYGLSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
I1P9C0_ORYGLSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
I1PC76_ORYGLSmall nuclear ribonucleoprotein G. (80 aa)
I1PKN9_ORYGLSm domain-containing protein. (97 aa)
I1PM45_ORYGLSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
I1PUA5_ORYGLSmall nuclear ribonucleoprotein Sm D2. (106 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (63 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (141 aa)
I1Q2E8_ORYGLUncharacterized protein. (693 aa)
I1Q8C3_ORYGLSmall nuclear ribonucleoprotein-associated protein. (261 aa)
I1QC32_ORYGLSmall nuclear ribonucleoprotein G. (80 aa)
I1QFN9_ORYGLSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
I1QFR5_ORYGLSm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
I1R1W3_ORYGLSm domain-containing protein. (86 aa)
I1NJN1_ORYGLUncharacterized protein. (619 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (106 aa)
I1NVK3_ORYGLSmall nuclear ribonucleoprotein Sm D2. (107 aa)
I1NWB3_ORYGLSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
I1NWU5_ORYGLSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
I1NXT4_ORYGLSm domain-containing protein. (86 aa)
I1P0F9_ORYGLLsmAD domain-containing protein. (584 aa)
Your Current Organism:
Oryza glaberrima
NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.
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