18 items (Oryza glaberrima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1R2I1_ORYGL	Uncharacterized protein. (1181 aa)
	I1NMR0_ORYGL	Ubiquitin-like domain-containing protein. (155 aa)
	I1NNK8_ORYGL	Uncharacterized protein. (1183 aa)
	I1P4P6_ORYGL	Uncharacterized protein. (204 aa)
	I1P7Y5_ORYGL	Serine/threonine-protein phosphatase. (329 aa)
	I1PFJ2_ORYGL	COR domain-containing protein. (1239 aa)
	I1PGH2_ORYGL	Serine/threonine-protein phosphatase. (307 aa)
	I1PSP4_ORYGL	Ubiquitin-like domain-containing protein. (155 aa)
	I1Q0H7_ORYGL	Uncharacterized protein. (236 aa)
	I1Q124_ORYGL	Uncharacterized protein. (501 aa)
	I1Q1S2_ORYGL	Uncharacterized protein. (902 aa)
	I1Q379_ORYGL	Serine/threonine-protein phosphatase. (306 aa)
	I1QG74_ORYGL	Ubiquitin-like domain-containing protein. (211 aa)
	I1QG79_ORYGL	TMEM189_B_dmain domain-containing protein. (97 aa)
	I1QMA6_ORYGL	Uncharacterized protein. (587 aa)
	I1QUE7_ORYGL	Serine/threonine-protein phosphatase. (314 aa)
	I1R5X4_ORYGL	Uncharacterized protein. (204 aa)
	I1R5X5_ORYGL	PsaL domain-containing protein. (208 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NMR0_ORYGL	I1NNK8_ORYGL	I1NMR0	I1NNK8	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.565
I1NMR0_ORYGL	I1P7Y5_ORYGL	I1NMR0	I1P7Y5	Ubiquitin-like domain-containing protein.	Serine/threonine-protein phosphatase.	0.590
I1NMR0_ORYGL	I1PFJ2_ORYGL	I1NMR0	I1PFJ2	Ubiquitin-like domain-containing protein.	COR domain-containing protein.	0.691
I1NMR0_ORYGL	I1PGH2_ORYGL	I1NMR0	I1PGH2	Ubiquitin-like domain-containing protein.	Serine/threonine-protein phosphatase.	0.590
I1NMR0_ORYGL	I1PSP4_ORYGL	I1NMR0	I1PSP4	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.926
I1NMR0_ORYGL	I1Q124_ORYGL	I1NMR0	I1Q124	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.691
I1NMR0_ORYGL	I1Q1S2_ORYGL	I1NMR0	I1Q1S2	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.565
I1NMR0_ORYGL	I1Q379_ORYGL	I1NMR0	I1Q379	Ubiquitin-like domain-containing protein.	Serine/threonine-protein phosphatase.	0.590
I1NMR0_ORYGL	I1QG79_ORYGL	I1NMR0	I1QG79	Ubiquitin-like domain-containing protein.	TMEM189_B_dmain domain-containing protein.	0.935
I1NMR0_ORYGL	I1QMA6_ORYGL	I1NMR0	I1QMA6	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.565
I1NMR0_ORYGL	I1QUE7_ORYGL	I1NMR0	I1QUE7	Ubiquitin-like domain-containing protein.	Serine/threonine-protein phosphatase.	0.590
I1NMR0_ORYGL	I1R2I1_ORYGL	I1NMR0	I1R2I1	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.565
I1NNK8_ORYGL	I1NMR0_ORYGL	I1NNK8	I1NMR0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.565
I1NNK8_ORYGL	I1P7Y5_ORYGL	I1NNK8	I1P7Y5	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.916
I1NNK8_ORYGL	I1PGH2_ORYGL	I1NNK8	I1PGH2	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.916
I1NNK8_ORYGL	I1PSP4_ORYGL	I1NNK8	I1PSP4	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.565
I1NNK8_ORYGL	I1Q379_ORYGL	I1NNK8	I1Q379	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.916
I1NNK8_ORYGL	I1QG74_ORYGL	I1NNK8	I1QG74	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.565
I1NNK8_ORYGL	I1QUE7_ORYGL	I1NNK8	I1QUE7	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.916
I1P7Y5_ORYGL	I1NMR0_ORYGL	I1P7Y5	I1NMR0	Serine/threonine-protein phosphatase.	Ubiquitin-like domain-containing protein.	0.590