35 items (Oryza glaberrima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I1PNN0_ORYGL	Uncharacterized protein. (499 aa)
	I1PW74_ORYGL	Uncharacterized protein. (420 aa)
	I1PWB8_ORYGL	Uncharacterized protein. (970 aa)
	I1Q0Q1_ORYGL	Uncharacterized protein. (491 aa)
	I1Q139_ORYGL	Uncharacterized protein. (222 aa)
	I1Q2X4_ORYGL	Uncharacterized protein. (603 aa)
	I1Q4P2_ORYGL	Uncharacterized protein. (569 aa)
	I1Q6V0_ORYGL	Uncharacterized protein. (512 aa)
	I1Q725_ORYGL	Uncharacterized protein. (508 aa)
	I1QCK9_ORYGL	Uncharacterized protein. (397 aa)
	I1QEG7_ORYGL	Uncharacterized protein. (557 aa)
	I1QEW5_ORYGL	Uncharacterized protein. (585 aa)
	I1QL25_ORYGL	Uncharacterized protein. (598 aa)
	I1QLF7_ORYGL	AP2/ERF domain-containing protein. (550 aa)
	I1QPC1_ORYGL	Uncharacterized protein. (638 aa)
	I1QQ52_ORYGL	Uncharacterized protein. (425 aa)
	I1QV39_ORYGL	Uncharacterized protein. (642 aa)
	I1QVY3_ORYGL	Uncharacterized protein. (538 aa)
	I1QY61_ORYGL	Uncharacterized protein. (534 aa)
	I1R4G2_ORYGL	Uncharacterized protein. (566 aa)
	I1R4P3_ORYGL	Uncharacterized protein. (495 aa)
	I1PHU3_ORYGL	Uncharacterized protein. (527 aa)
	I1PBJ9_ORYGL	Uncharacterized protein. (399 aa)
	I1PAY5_ORYGL	Uncharacterized protein. (500 aa)
	I1P7Z8_ORYGL	Uncharacterized protein. (466 aa)
	I1P3T9_ORYGL	Uncharacterized protein. (510 aa)
	I1NXM4_ORYGL	Uncharacterized protein. (441 aa)
	I1NXF9_ORYGL	Uncharacterized protein. (573 aa)
	I1NX42_ORYGL	Uncharacterized protein. (102 aa)
	I1NTD8_ORYGL	Uncharacterized protein. (574 aa)
	I1NT72_ORYGL	Uncharacterized protein. (334 aa)
	I1NKL4_ORYGL	Uncharacterized protein. (486 aa)
	I1R5Y9_ORYGL	Uncharacterized protein. (563 aa)
	I1PS72_ORYGL	Uncharacterized protein. (654 aa)
	I1PNV6_ORYGL	Uncharacterized protein. (570 aa)

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

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Export your current network:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NXF9_ORYGL	I1QEG7_ORYGL	I1NXF9	I1QEG7	Uncharacterized protein.	Uncharacterized protein.	0.539
I1PNN0_ORYGL	I1QEG7_ORYGL	I1PNN0	I1QEG7	Uncharacterized protein.	Uncharacterized protein.	0.588
I1PNV6_ORYGL	I1QEG7_ORYGL	I1PNV6	I1QEG7	Uncharacterized protein.	Uncharacterized protein.	0.496
I1PS72_ORYGL	I1QEG7_ORYGL	I1PS72	I1QEG7	Uncharacterized protein.	Uncharacterized protein.	0.504
I1Q2X4_ORYGL	I1QEG7_ORYGL	I1Q2X4	I1QEG7	Uncharacterized protein.	Uncharacterized protein.	0.477
I1Q4P2_ORYGL	I1QEG7_ORYGL	I1Q4P2	I1QEG7	Uncharacterized protein.	Uncharacterized protein.	0.534
I1QEG7_ORYGL	I1NXF9_ORYGL	I1QEG7	I1NXF9	Uncharacterized protein.	Uncharacterized protein.	0.539
I1QEG7_ORYGL	I1PNN0_ORYGL	I1QEG7	I1PNN0	Uncharacterized protein.	Uncharacterized protein.	0.588
I1QEG7_ORYGL	I1PNV6_ORYGL	I1QEG7	I1PNV6	Uncharacterized protein.	Uncharacterized protein.	0.496
I1QEG7_ORYGL	I1PS72_ORYGL	I1QEG7	I1PS72	Uncharacterized protein.	Uncharacterized protein.	0.504
I1QEG7_ORYGL	I1Q2X4_ORYGL	I1QEG7	I1Q2X4	Uncharacterized protein.	Uncharacterized protein.	0.477
I1QEG7_ORYGL	I1Q4P2_ORYGL	I1QEG7	I1Q4P2	Uncharacterized protein.	Uncharacterized protein.	0.534
I1QEG7_ORYGL	I1QEW5_ORYGL	I1QEG7	I1QEW5	Uncharacterized protein.	Uncharacterized protein.	0.413
I1QEG7_ORYGL	I1QL25_ORYGL	I1QEG7	I1QL25	Uncharacterized protein.	Uncharacterized protein.	0.450
I1QEG7_ORYGL	I1QV39_ORYGL	I1QEG7	I1QV39	Uncharacterized protein.	Uncharacterized protein.	0.457
I1QEW5_ORYGL	I1QEG7_ORYGL	I1QEW5	I1QEG7	Uncharacterized protein.	Uncharacterized protein.	0.413
I1QL25_ORYGL	I1QEG7_ORYGL	I1QL25	I1QEG7	Uncharacterized protein.	Uncharacterized protein.	0.450
I1QV39_ORYGL	I1QEG7_ORYGL	I1QV39	I1QEG7	Uncharacterized protein.	Uncharacterized protein.	0.457