(45 nodes) Catalytic step 2 spliceosome network (Coccidioides immitis RMSCC3703)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CISG_01603	Uncharacterized protein. (80 aa)
	CISG_06891	Pinin_SDK_memA domain-containing protein. (232 aa)
	CISG_08808	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (223 aa)
	CISG_07530	Cell cycle control protein cwf17. (362 aa)
	CISG_00474	Sm domain-containing protein. (144 aa)
	CISG_03300	Pre-mRNA-splicing factor prp1. (164 aa)
	CISG_09909	Pre-mRNA-splicing factor prp46. (450 aa)
	CISG_03357	Peptidyl-prolyl isomerase cwc27. (560 aa)
	CISG_03434	Cell cycle control protein cwf16. (273 aa)
	CISG_03480	WD_REPEATS_REGION domain-containing protein. (136 aa)
	CISG_03481	Mitogen-activated protein kinase organizer 1. (180 aa)
	CISG_10124	G7b alternative form. (178 aa)
	CISG_10063	Small nuclear ribonucleoprotein G. (78 aa)
	CISG_09674	Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16. (308 aa)
	CISG_03292	RRM domain-containing protein. (115 aa)
	CISG_03302	Pre-mRNA splicing factor prp1. (78 aa)
	CISG_03988	Small nuclear ribonucleoprotein Sm D2. (114 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	CISG_03961	Spliceosome associated protein 145. (549 aa)
	CISG_05519	Pre-mRNA-splicing factor cwc2. (413 aa)
	CISG_01174	Splicing factor 3a. (239 aa)
	CISG_06493	Pre-mRNA processing splicing factor 8. (2010 aa)
	CISG_07025	Pre-mRNA-splicing factor cwc15. (236 aa)
	CISG_06487	Uncharacterized protein. (545 aa)
	CISG_06590	ESDC protein. (266 aa)
	CISG_07096	U2 snRNP component prp10. (102 aa)
	CISG_06982	Pre-mRNA-splicing factor cwc22. (493 aa)
	CISG_06303	Pre-mRNA-splicing factor slt11. (383 aa)
	CISG_01844	Pre-mRNA-splicing factor syf1. (852 aa)
	CISG_07095	U2 snRNP component prp10. (863 aa)
	CISG_01908	Uncharacterized protein. (213 aa)
	CISG_08630	Pre-mRNA splicing factor. (580 aa)
	CISG_09144	Pre-mRNA-splicing factor clf1. (479 aa)
	CISG_02244	WD repeat-containing protein 5B. (573 aa)
	CISG_02464	Pre-mRNA-splicing factor syf2. (292 aa)
	CISG_02670	Elongation factor 2. (517 aa)
	CISG_02829	Sm domain-containing protein. (89 aa)
	CISG_09603	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (141 aa)
	CISG_09553	Peptidyl-prolyl cis-trans isomerase B. (525 aa)
	CISG_09673	Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16. (606 aa)
	CISG_03301	Pre-mRNA-splicing factor prp1. (214 aa)
	CISG_03855	Uncharacterized protein. (400 aa)
	CISG_04190	Uncharacterized protein. (1065 aa)
	CISG_04906	Sm domain-containing protein. (223 aa)
	CISG_01409	Uncharacterized protein. (327 aa)

Your Current Organism:

Coccidioides immitis RMSCC3703

NCBI taxonomy Id: 454286
Other names: C. immitis RMSCC 3703, Coccidioides immitis RMSCC 3703

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CISG_00474	CISG_01174	A0A0J8QI96	A0A0J8QVE4	Sm domain-containing protein.	Splicing factor 3a.	0.911
CISG_00474	CISG_02670	A0A0J8QI96	A0A0J8RBL5	Sm domain-containing protein.	Elongation factor 2.	0.952
CISG_00474	CISG_02829	A0A0J8QI96	A0A0J8RD35	Sm domain-containing protein.	Sm domain-containing protein.	0.987
CISG_00474	CISG_03292	A0A0J8QI96	A0A0J8QNM6	Sm domain-containing protein.	RRM domain-containing protein.	0.750
CISG_00474	CISG_03300	A0A0J8QI96	A0A0J8QK98	Sm domain-containing protein.	Pre-mRNA-splicing factor prp1.	0.916
CISG_00474	CISG_03301	A0A0J8QI96	A0A0J8TGT2	Sm domain-containing protein.	Pre-mRNA-splicing factor prp1.	0.916
CISG_00474	CISG_03302	A0A0J8QI96	A0A0J8QNN3	Sm domain-containing protein.	Pre-mRNA splicing factor prp1.	0.916
CISG_00474	CISG_03961	A0A0J8QI96	A0A0J8QRW5	Sm domain-containing protein.	Spliceosome associated protein 145.	0.901
CISG_00474	CISG_03988	A0A0J8QI96	A0A0J8QNN8	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.993
CISG_00474	CISG_04906	A0A0J8QI96	A0A0J8TPT3	Sm domain-containing protein.	Sm domain-containing protein.	0.953
CISG_00474	CISG_06303	A0A0J8QI96	A0A0J8R0B0	Sm domain-containing protein.	Pre-mRNA-splicing factor slt11.	0.618
CISG_00474	CISG_06493	A0A0J8QI96	A0A0J8QYF0	Sm domain-containing protein.	Pre-mRNA processing splicing factor 8.	0.954
CISG_00474	CISG_06590	A0A0J8QI96	A0A0J8QZM9	Sm domain-containing protein.	ESDC protein.	0.970
CISG_00474	CISG_07025	A0A0J8QI96	A0A0J8QZ78	Sm domain-containing protein.	Pre-mRNA-splicing factor cwc15.	0.598
CISG_00474	CISG_07095	A0A0J8QI96	A0A0J8R3S8	Sm domain-containing protein.	U2 snRNP component prp10.	0.868
CISG_00474	CISG_07096	A0A0J8QI96	A0A0J8QZQ3	Sm domain-containing protein.	U2 snRNP component prp10.	0.868
CISG_00474	CISG_07530	A0A0J8QI96	A0A0J8TYW6	Sm domain-containing protein.	Cell cycle control protein cwf17.	0.753
CISG_00474	CISG_08630	A0A0J8QI96	A0A0J8R729	Sm domain-containing protein.	Pre-mRNA splicing factor.	0.907
CISG_00474	CISG_08808	A0A0J8QI96	A0A0J8U2M9	Sm domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.409
CISG_00474	CISG_09144	A0A0J8QI96	A0A0J8R962	Sm domain-containing protein.	Pre-mRNA-splicing factor clf1.	0.936