(53 nodes) Histone deacetylation, and BRIGHT, ARID (A/T-rich interaction domain) domain network (Setaria italica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A368PGS1	Uncharacterized protein. (382 aa)
	A0A368PSR0	Uncharacterized protein. (1606 aa)
	A0A368PX87	RanBP2-type domain-containing protein. (631 aa)
	A0A368Q7P5	Hist_deacetyl domain-containing protein. (771 aa)
	A0A368Q9D6	Hist_deacetyl domain-containing protein. (146 aa)
	A0A368QBV9	Uncharacterized protein. (1708 aa)
	A0A368QEC0	Hist_deacetyl domain-containing protein. (309 aa)
	A0A368QEG8	HDAC_interact domain-containing protein. (902 aa)
	A0A368QG13	Uncharacterized protein. (741 aa)
	A0A368QLU4	Uncharacterized protein. (534 aa)
	A0A368QP62	DUF4477 domain-containing protein. (433 aa)
	A0A368QSZ0	Uncharacterized protein. (124 aa)
	A0A368R6B3	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (404 aa)
	A0A368RH17	Uncharacterized protein. (131 aa)
	A0A368RH92	Uncharacterized protein. (108 aa)
	A0A368RHG5	Uncharacterized protein. (117 aa)
	A0A368RRQ9	SANT domain-containing protein. (1179 aa)
	A0A368S0N5	Hist_deacetyl domain-containing protein. (444 aa)
	A0A368S7Y8	Uncharacterized protein. (134 aa)
	A0A368SB20	Uncharacterized protein. (207 aa)
	A0A368SHG7	LisH domain-containing protein. (401 aa)
	A0A368SJC0	Hist_deacetyl domain-containing protein. (51 aa)
	K3XDR8_SETIT	Uncharacterized protein. (1516 aa)
	K3XN34_SETIT	Uncharacterized protein. (137 aa)
	K3XPJ9_SETIT	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (410 aa)
	K3XSD6_SETIT	Uncharacterized protein. (466 aa)
	K3XSY1_SETIT	Uncharacterized protein. (137 aa)
	K3XUU3_SETIT	Uncharacterized protein. (1330 aa)
	K3XVJ4_SETIT	PX domain-containing protein. (712 aa)
	K3XWD5_SETIT	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (518 aa)
	K3XWR4_SETIT	Uncharacterized protein. (465 aa)
	K3XXX6_SETIT	Hist_deacetyl domain-containing protein. (351 aa)
	K3Y2T3_SETIT	Uncharacterized protein. (268 aa)
	K3Y699_SETIT	Uncharacterized protein. (557 aa)
	K3Y7H6_SETIT	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (430 aa)
	K3Y7I0_SETIT	Hist_deacetyl domain-containing protein. (429 aa)
	K3YHJ1_SETIT	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (458 aa)
	K3YKD1_SETIT	Uncharacterized protein. (108 aa)
	K3YKE8_SETIT	Uncharacterized protein. (100 aa)
	K3YRL4_SETIT	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (522 aa)
	K3YS29_SETIT	Uncharacterized protein. (479 aa)
	K3YSC4_SETIT	Uncharacterized protein. (456 aa)
	K3YT09_SETIT	Uncharacterized protein. (402 aa)
	K3YX45_SETIT	Uncharacterized protein. (92 aa)
	K3Z083_SETIT	Protein kinase domain-containing protein. (99 aa)
	K3Z335_SETIT	Uncharacterized protein. (1741 aa)
	K3Z497_SETIT	Uncharacterized protein. (698 aa)
	K3Z6Z1_SETIT	Hist_deacetyl domain-containing protein. (386 aa)
	K3ZN47_SETIT	Uncharacterized protein. (194 aa)
	K3ZPV9_SETIT	Uncharacterized protein. (2224 aa)
	K3ZR61_SETIT	Hist_deacetyl domain-containing protein. (704 aa)
	K3ZRG4_SETIT	RanBP2-type domain-containing protein. (638 aa)
	K4AJI4_SETIT	Uncharacterized protein. (244 aa)

Your Current Organism:

Setaria italica

NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A368PGS1	A0A368PSR0	A0A368PGS1	A0A368PSR0	Uncharacterized protein.	Uncharacterized protein.	0.537
A0A368PGS1	A0A368QBV9	A0A368PGS1	A0A368QBV9	Uncharacterized protein.	Uncharacterized protein.	0.607
A0A368PGS1	A0A368QEG8	A0A368PGS1	A0A368QEG8	Uncharacterized protein.	HDAC_interact domain-containing protein.	0.422
A0A368PGS1	A0A368QG13	A0A368PGS1	A0A368QG13	Uncharacterized protein.	Uncharacterized protein.	0.562
A0A368PGS1	A0A368QLU4	A0A368PGS1	A0A368QLU4	Uncharacterized protein.	Uncharacterized protein.	0.422
A0A368PGS1	A0A368QP62	A0A368PGS1	A0A368QP62	Uncharacterized protein.	DUF4477 domain-containing protein.	0.607
A0A368PGS1	A0A368QSZ0	A0A368PGS1	A0A368QSZ0	Uncharacterized protein.	Uncharacterized protein.	0.422
A0A368PGS1	A0A368RH17	A0A368PGS1	A0A368RH17	Uncharacterized protein.	Uncharacterized protein.	0.422
A0A368PGS1	A0A368RH92	A0A368PGS1	A0A368RH92	Uncharacterized protein.	Uncharacterized protein.	0.422
A0A368PGS1	A0A368RHG5	A0A368PGS1	A0A368RHG5	Uncharacterized protein.	Uncharacterized protein.	0.422
A0A368PGS1	A0A368RRQ9	A0A368PGS1	A0A368RRQ9	Uncharacterized protein.	SANT domain-containing protein.	0.607
A0A368PGS1	A0A368S7Y8	A0A368PGS1	A0A368S7Y8	Uncharacterized protein.	Uncharacterized protein.	0.698
A0A368PGS1	A0A368SB20	A0A368PGS1	A0A368SB20	Uncharacterized protein.	Uncharacterized protein.	0.422
A0A368PGS1	A0A368SHG7	A0A368PGS1	A0A368SHG7	Uncharacterized protein.	LisH domain-containing protein.	0.583
A0A368PGS1	K3XDR8_SETIT	A0A368PGS1	K3XDR8	Uncharacterized protein.	Uncharacterized protein.	0.562
A0A368PGS1	K3XN34_SETIT	A0A368PGS1	K3XN34	Uncharacterized protein.	Uncharacterized protein.	0.422
A0A368PGS1	K3XSY1_SETIT	A0A368PGS1	K3XSY1	Uncharacterized protein.	Uncharacterized protein.	0.422
A0A368PGS1	K3XVJ4_SETIT	A0A368PGS1	K3XVJ4	Uncharacterized protein.	PX domain-containing protein.	0.607
A0A368PGS1	K3XWR4_SETIT	A0A368PGS1	K3XWR4	Uncharacterized protein.	Uncharacterized protein.	0.507
A0A368PGS1	K3Y2T3_SETIT	A0A368PGS1	K3Y2T3	Uncharacterized protein.	Uncharacterized protein.	0.542

page 1 of 91

Server load: medium (46%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About