(12 nodes) Mixed, incl. Membrane fusion protein Use1, and Vesicle-trafficking protein Sec22 network (Setaria italica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A368PZP3	Uncharacterized protein. (402 aa)
	A0A368Q9C8	Uncharacterized protein. (820 aa)
	A0A368RT95	Uncharacterized protein. (237 aa)
	K3XDW2_SETIT	Uncharacterized protein. (1226 aa)
	K3XLT5_SETIT	Uncharacterized protein; Belongs to the synaptobrevin family. (218 aa)
	K3XLU0_SETIT	Uncharacterized protein; Belongs to the synaptobrevin family. (218 aa)
	K3Y8T7_SETIT	Syntaxin-18_N domain-containing protein. (317 aa)
	K3Y989_SETIT	Uncharacterized protein. (283 aa)
	K3YJF8_SETIT	Uncharacterized protein. (237 aa)
	K3Z324_SETIT	Sec39 domain-containing protein. (2413 aa)
	K3ZHG7_SETIT	Uncharacterized protein. (746 aa)
	K3ZWK9_SETIT	Uncharacterized protein. (234 aa)

Your Current Organism:

Setaria italica

NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet

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Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A368PZP3	A0A368Q9C8	A0A368PZP3	A0A368Q9C8	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A368PZP3	A0A368RT95	A0A368PZP3	A0A368RT95	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A368PZP3	K3XDW2_SETIT	A0A368PZP3	K3XDW2	Uncharacterized protein.	Uncharacterized protein.	0.958
A0A368PZP3	K3XLT5_SETIT	A0A368PZP3	K3XLT5	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.892
A0A368PZP3	K3XLU0_SETIT	A0A368PZP3	K3XLU0	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.892
A0A368PZP3	K3Y8T7_SETIT	A0A368PZP3	K3Y8T7	Uncharacterized protein.	Syntaxin-18_N domain-containing protein.	0.980
A0A368PZP3	K3Y989_SETIT	A0A368PZP3	K3Y989	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A368PZP3	K3YJF8_SETIT	A0A368PZP3	K3YJF8	Uncharacterized protein.	Uncharacterized protein.	0.546
A0A368PZP3	K3Z324_SETIT	A0A368PZP3	K3Z324	Uncharacterized protein.	Sec39 domain-containing protein.	0.945
A0A368PZP3	K3ZHG7_SETIT	A0A368PZP3	K3ZHG7	Uncharacterized protein.	Uncharacterized protein.	0.978
A0A368Q9C8	A0A368PZP3	A0A368Q9C8	A0A368PZP3	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A368Q9C8	A0A368RT95	A0A368Q9C8	A0A368RT95	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A368Q9C8	K3XDW2_SETIT	A0A368Q9C8	K3XDW2	Uncharacterized protein.	Uncharacterized protein.	0.984
A0A368Q9C8	K3XLT5_SETIT	A0A368Q9C8	K3XLT5	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.844
A0A368Q9C8	K3XLU0_SETIT	A0A368Q9C8	K3XLU0	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.844
A0A368Q9C8	K3Y8T7_SETIT	A0A368Q9C8	K3Y8T7	Uncharacterized protein.	Syntaxin-18_N domain-containing protein.	0.979
A0A368Q9C8	K3Y989_SETIT	A0A368Q9C8	K3Y989	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A368Q9C8	K3YJF8_SETIT	A0A368Q9C8	K3YJF8	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A368Q9C8	K3Z324_SETIT	A0A368Q9C8	K3Z324	Uncharacterized protein.	Sec39 domain-containing protein.	0.976
A0A368Q9C8	K3ZHG7_SETIT	A0A368Q9C8	K3ZHG7	Uncharacterized protein.	Uncharacterized protein.	0.988

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