(12 nodes) Retromer complex network (Setaria italica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

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co-expression

protein homology

Your Input:
	A0A368RDI0	PX domain-containing protein. (400 aa)
	A0A368S2X1	Uncharacterized protein. (50 aa)
	K3XG91_SETIT	PX domain-containing protein. (549 aa)
	K3XGN9_SETIT	PX domain-containing protein. (517 aa)
	K3XXE5_SETIT	PSII_BNR domain-containing protein. (395 aa)
	K3YVY1_SETIT	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family. (189 aa)
	K3Z545_SETIT	PX domain-containing protein. (549 aa)
	K3Z5I0_SETIT	PX domain-containing protein. (509 aa)
	K3Z8A5_SETIT	Uncharacterized protein. (304 aa)
	K4A4M6_SETIT	J domain-containing protein. (2580 aa)
	K4A602_SETIT	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (803 aa)
	K4A9N3_SETIT	Uncharacterized protein. (461 aa)

Your Current Organism:

Setaria italica

NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A368RDI0	K3XXE5_SETIT	A0A368RDI0	K3XXE5	PX domain-containing protein.	PSII_BNR domain-containing protein.	0.632
A0A368RDI0	K3YVY1_SETIT	A0A368RDI0	K3YVY1	PX domain-containing protein.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.861
A0A368RDI0	K3Z8A5_SETIT	A0A368RDI0	K3Z8A5	PX domain-containing protein.	Uncharacterized protein.	0.823
A0A368RDI0	K4A602_SETIT	A0A368RDI0	K4A602	PX domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.758
A0A368RDI0	K4A9N3_SETIT	A0A368RDI0	K4A9N3	PX domain-containing protein.	Uncharacterized protein.	0.741
A0A368S2X1	K3XXE5_SETIT	A0A368S2X1	K3XXE5	Uncharacterized protein.	PSII_BNR domain-containing protein.	0.632
A0A368S2X1	K3YVY1_SETIT	A0A368S2X1	K3YVY1	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.861
A0A368S2X1	K3Z8A5_SETIT	A0A368S2X1	K3Z8A5	Uncharacterized protein.	Uncharacterized protein.	0.823
A0A368S2X1	K4A602_SETIT	A0A368S2X1	K4A602	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.758
A0A368S2X1	K4A9N3_SETIT	A0A368S2X1	K4A9N3	Uncharacterized protein.	Uncharacterized protein.	0.741
K3XG91_SETIT	K3XXE5_SETIT	K3XG91	K3XXE5	PX domain-containing protein.	PSII_BNR domain-containing protein.	0.632
K3XG91_SETIT	K3YVY1_SETIT	K3XG91	K3YVY1	PX domain-containing protein.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.907
K3XG91_SETIT	K3Z8A5_SETIT	K3XG91	K3Z8A5	PX domain-containing protein.	Uncharacterized protein.	0.882
K3XG91_SETIT	K4A602_SETIT	K3XG91	K4A602	PX domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.838
K3XG91_SETIT	K4A9N3_SETIT	K3XG91	K4A9N3	PX domain-containing protein.	Uncharacterized protein.	0.741
K3XGN9_SETIT	K3XXE5_SETIT	K3XGN9	K3XXE5	PX domain-containing protein.	PSII_BNR domain-containing protein.	0.632
K3XGN9_SETIT	K3YVY1_SETIT	K3XGN9	K3YVY1	PX domain-containing protein.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.826
K3XGN9_SETIT	K3Z8A5_SETIT	K3XGN9	K3Z8A5	PX domain-containing protein.	Uncharacterized protein.	0.823
K3XGN9_SETIT	K4A4M6_SETIT	K3XGN9	K4A4M6	PX domain-containing protein.	J domain-containing protein.	0.565
K3XGN9_SETIT	K4A602_SETIT	K3XGN9	K4A602	PX domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.741

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