(11 nodes) Mixed, incl. Glycolipid binding, and Potassium channel KAT/AKT network (Setaria italica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A368PKJ5	ANK_REP_REGION domain-containing protein. (864 aa)
	A0A368RW70	Uncharacterized protein. (724 aa)
	K3XV89_SETIT	Uncharacterized protein. (854 aa)
	K3YGY0_SETIT	ANK_REP_REGION domain-containing protein. (561 aa)
	K3YQ39_SETIT	ANK_REP_REGION domain-containing protein. (772 aa)
	K3YQC6_SETIT	ANK_REP_REGION domain-containing protein. (718 aa)
	K3YW83_SETIT	ANK_REP_REGION domain-containing protein. (166 aa)
	K3ZHJ5_SETIT	ANK_REP_REGION domain-containing protein. (696 aa)
	K3ZV98_SETIT	ANK_REP_REGION domain-containing protein. (323 aa)
	K4A6K9_SETIT	ANK_REP_REGION domain-containing protein. (687 aa)
	K4AA27_SETIT	Uncharacterized protein. (442 aa)

Your Current Organism:

Setaria italica

NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A368PKJ5	A0A368RW70	A0A368PKJ5	A0A368RW70	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.501
A0A368PKJ5	K3YQC6_SETIT	A0A368PKJ5	K3YQC6	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.569
A0A368PKJ5	K3YW83_SETIT	A0A368PKJ5	K3YW83	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.648
A0A368PKJ5	K3ZHJ5_SETIT	A0A368PKJ5	K3ZHJ5	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.435
A0A368PKJ5	K3ZV98_SETIT	A0A368PKJ5	K3ZV98	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.563
A0A368PKJ5	K4A6K9_SETIT	A0A368PKJ5	K4A6K9	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.649
A0A368PKJ5	K4AA27_SETIT	A0A368PKJ5	K4AA27	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.503
A0A368RW70	A0A368PKJ5	A0A368RW70	A0A368PKJ5	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.501
A0A368RW70	K3YGY0_SETIT	A0A368RW70	K3YGY0	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.507
A0A368RW70	K3YQ39_SETIT	A0A368RW70	K3YQ39	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.500
A0A368RW70	K3YQC6_SETIT	A0A368RW70	K3YQC6	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.535
A0A368RW70	K4A6K9_SETIT	A0A368RW70	K4A6K9	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.501
A0A368RW70	K4AA27_SETIT	A0A368RW70	K4AA27	Uncharacterized protein.	Uncharacterized protein.	0.486
K3XV89_SETIT	K3YGY0_SETIT	K3XV89	K3YGY0	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.514
K3XV89_SETIT	K3YQC6_SETIT	K3XV89	K3YQC6	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.618
K3XV89_SETIT	K3ZV98_SETIT	K3XV89	K3ZV98	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.423
K3XV89_SETIT	K4A6K9_SETIT	K3XV89	K4A6K9	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.516
K3YGY0_SETIT	A0A368RW70	K3YGY0	A0A368RW70	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.507
K3YGY0_SETIT	K3XV89_SETIT	K3YGY0	K3XV89	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.514
K3YGY0_SETIT	K3YW83_SETIT	K3YGY0	K3YW83	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.406

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