(15 nodes) Mixed, incl. Cell killing, and Auxin responsive protein network (Setaria italica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0Q3NUT4	Uncharacterized protein. (147 aa)
	A0A368PUI5	Uncharacterized protein. (158 aa)
	A0A368QJT8	Uncharacterized protein. (100 aa)
	A0A368SCF0	Uncharacterized protein. (152 aa)
	K3Z7T3_SETIT	GUB_WAK_bind domain-containing protein. (335 aa)
	K3ZXR6_SETIT	Uncharacterized protein. (149 aa)
	K3ZXR8_SETIT	Uncharacterized protein. (149 aa)
	K3ZXT1_SETIT	Uncharacterized protein. (148 aa)
	K3ZXT4_SETIT	Uncharacterized protein. (147 aa)
	K3ZZR2_SETIT	Uncharacterized protein. (142 aa)
	K4A5H6_SETIT	DYW_deaminase domain-containing protein. (920 aa)
	K4AGZ6_SETIT	Uncharacterized protein. (107 aa)
	K4AHF3_SETIT	Knot1 domain-containing protein; Belongs to the DEFL family. (81 aa)
	K4AJ06_SETIT	Uncharacterized protein. (146 aa)
	K4AJP4_SETIT	DYW_deaminase domain-containing protein. (803 aa)

Your Current Organism:

Setaria italica

NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3NUT4	A0A368PUI5	A0A0Q3NUT4	A0A368PUI5	Uncharacterized protein.	Uncharacterized protein.	0.513
A0A0Q3NUT4	A0A368QJT8	A0A0Q3NUT4	A0A368QJT8	Uncharacterized protein.	Uncharacterized protein.	0.483
A0A0Q3NUT4	A0A368SCF0	A0A0Q3NUT4	A0A368SCF0	Uncharacterized protein.	Uncharacterized protein.	0.511
A0A0Q3NUT4	K3Z7T3_SETIT	A0A0Q3NUT4	K3Z7T3	Uncharacterized protein.	GUB_WAK_bind domain-containing protein.	0.466
A0A0Q3NUT4	K3ZXR8_SETIT	A0A0Q3NUT4	K3ZXR8	Uncharacterized protein.	Uncharacterized protein.	0.427
A0A0Q3NUT4	K3ZXT1_SETIT	A0A0Q3NUT4	K3ZXT1	Uncharacterized protein.	Uncharacterized protein.	0.447
A0A0Q3NUT4	K3ZXT4_SETIT	A0A0Q3NUT4	K3ZXT4	Uncharacterized protein.	Uncharacterized protein.	0.422
A0A0Q3NUT4	K3ZZR2_SETIT	A0A0Q3NUT4	K3ZZR2	Uncharacterized protein.	Uncharacterized protein.	0.443
A0A0Q3NUT4	K4AGZ6_SETIT	A0A0Q3NUT4	K4AGZ6	Uncharacterized protein.	Uncharacterized protein.	0.443
A0A0Q3NUT4	K4AJ06_SETIT	A0A0Q3NUT4	K4AJ06	Uncharacterized protein.	Uncharacterized protein.	0.513
A0A368PUI5	A0A0Q3NUT4	A0A368PUI5	A0A0Q3NUT4	Uncharacterized protein.	Uncharacterized protein.	0.513
A0A368PUI5	A0A368QJT8	A0A368PUI5	A0A368QJT8	Uncharacterized protein.	Uncharacterized protein.	0.476
A0A368PUI5	K3Z7T3_SETIT	A0A368PUI5	K3Z7T3	Uncharacterized protein.	GUB_WAK_bind domain-containing protein.	0.466
A0A368QJT8	A0A0Q3NUT4	A0A368QJT8	A0A0Q3NUT4	Uncharacterized protein.	Uncharacterized protein.	0.483
A0A368QJT8	A0A368PUI5	A0A368QJT8	A0A368PUI5	Uncharacterized protein.	Uncharacterized protein.	0.476
A0A368QJT8	A0A368SCF0	A0A368QJT8	A0A368SCF0	Uncharacterized protein.	Uncharacterized protein.	0.487
A0A368QJT8	K3Z7T3_SETIT	A0A368QJT8	K3Z7T3	Uncharacterized protein.	GUB_WAK_bind domain-containing protein.	0.511
A0A368QJT8	K3ZXR6_SETIT	A0A368QJT8	K3ZXR6	Uncharacterized protein.	Uncharacterized protein.	0.457
A0A368QJT8	K3ZXR8_SETIT	A0A368QJT8	K3ZXR8	Uncharacterized protein.	Uncharacterized protein.	0.466
A0A368QJT8	K3ZXT1_SETIT	A0A368QJT8	K3ZXT1	Uncharacterized protein.	Uncharacterized protein.	0.439

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