STRINGSTRING
A0A368PVN1 A0A368PVN1 A0A368PX36 A0A368PX36 A0A368SCZ0 A0A368SCZ0 A0A368SS30 A0A368SS30 K3XEN9_SETIT K3XEN9_SETIT K3XGW3_SETIT K3XGW3_SETIT K3XNH6_SETIT K3XNH6_SETIT K3XW16_SETIT K3XW16_SETIT K3YAY9_SETIT K3YAY9_SETIT K3YFZ8_SETIT K3YFZ8_SETIT K3YKH7_SETIT K3YKH7_SETIT K3YPC2_SETIT K3YPC2_SETIT K3YR56_SETIT K3YR56_SETIT K3YVG8_SETIT K3YVG8_SETIT K3YX55_SETIT K3YX55_SETIT K3ZAY8_SETIT K3ZAY8_SETIT K3ZB21_SETIT K3ZB21_SETIT K3ZW48_SETIT K3ZW48_SETIT K3ZYI2_SETIT K3ZYI2_SETIT K3ZYM4_SETIT K3ZYM4_SETIT K4A4Z3_SETIT K4A4Z3_SETIT K4ACP9_SETIT K4ACP9_SETIT K4ADI2_SETIT K4ADI2_SETIT K4AGJ3_SETIT K4AGJ3_SETIT
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A368PVN1Uncharacterized protein. (134 aa)
A0A368PX36CPSF_A domain-containing protein. (1360 aa)
A0A368SCZ0RRM domain-containing protein. (130 aa)
A0A368SS30Uncharacterized protein. (232 aa)
K3XEN9_SETITUncharacterized protein. (796 aa)
K3XGW3_SETITMatrin-type domain-containing protein. (503 aa)
K3XNH6_SETITSmall nuclear ribonucleoprotein Sm D2. (104 aa)
K3XW16_SETITPSP domain-containing protein. (583 aa)
K3YAY9_SETITSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (115 aa)
K3YFZ8_SETITUncharacterized protein. (1065 aa)
K3YKH7_SETITSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
K3YPC2_SETITTOG domain-containing protein. (1278 aa)
K3YR56_SETITPSP domain-containing protein. (580 aa)
K3YVG8_SETITU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (230 aa)
K3YX55_SETITSm domain-containing protein. (91 aa)
K3ZAY8_SETITUncharacterized protein. (110 aa)
K3ZB21_SETITSmall nuclear ribonucleoprotein Sm D2. (104 aa)
K3ZW48_SETITSmall nuclear ribonucleoprotein-associated protein. (264 aa)
K3ZYI2_SETITSplicing factor subunit; Belongs to the SF3B5 family. (89 aa)
K3ZYM4_SETITSmall nuclear ribonucleoprotein G. (81 aa)
K4A4Z3_SETITCPSF_A domain-containing protein. (1230 aa)
K4ACP9_SETITMatrin-type domain-containing protein. (321 aa)
K4ADI2_SETITUncharacterized protein. (282 aa)
K4AGJ3_SETITSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet
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