(16 nodes) Mixed, incl. Protein effector of transcription, and Haem oxygenase HugZ-like superfamily network (Setaria italica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A368RJI7	Uncharacterized protein. (225 aa)
	A0A368RK15	Uncharacterized protein. (296 aa)
	A0A368S7W1	Uncharacterized protein. (472 aa)
	A0A368SDZ1	Uncharacterized protein. (194 aa)
	A0A368SN67	Uncharacterized protein. (184 aa)
	K3XFK9_SETIT	DUF3506 domain-containing protein. (627 aa)
	K3XJ02_SETIT	Uncharacterized protein. (376 aa)
	K3XNV7_SETIT	Uncharacterized protein. (81 aa)
	K3XY48_SETIT	Homeobox domain-containing protein. (333 aa)
	K3YE65_SETIT	Uncharacterized protein. (713 aa)
	K3YJZ2_SETIT	F-box domain-containing protein. (163 aa)
	K3Z733_SETIT	Uncharacterized protein. (380 aa)
	K3ZHI4_SETIT	Uncharacterized protein. (710 aa)
	K3ZIC3_SETIT	Uncharacterized protein. (471 aa)
	K3ZRX3_SETIT	GIY-YIG domain-containing protein. (571 aa)
	K4A0U5_SETIT	Uncharacterized protein. (149 aa)

Your Current Organism:

Setaria italica

NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A368RJI7	A0A368SDZ1	A0A368RJI7	A0A368SDZ1	Uncharacterized protein.	Uncharacterized protein.	0.454
A0A368RJI7	K3XJ02_SETIT	A0A368RJI7	K3XJ02	Uncharacterized protein.	Uncharacterized protein.	0.406
A0A368RJI7	K3YE65_SETIT	A0A368RJI7	K3YE65	Uncharacterized protein.	Uncharacterized protein.	0.491
A0A368RJI7	K3ZHI4_SETIT	A0A368RJI7	K3ZHI4	Uncharacterized protein.	Uncharacterized protein.	0.491
A0A368RJI7	K3ZRX3_SETIT	A0A368RJI7	K3ZRX3	Uncharacterized protein.	GIY-YIG domain-containing protein.	0.431
A0A368RK15	A0A368S7W1	A0A368RK15	A0A368S7W1	Uncharacterized protein.	Uncharacterized protein.	0.462
A0A368RK15	A0A368SN67	A0A368RK15	A0A368SN67	Uncharacterized protein.	Uncharacterized protein.	0.508
A0A368RK15	K3XJ02_SETIT	A0A368RK15	K3XJ02	Uncharacterized protein.	Uncharacterized protein.	0.496
A0A368RK15	K3XNV7_SETIT	A0A368RK15	K3XNV7	Uncharacterized protein.	Uncharacterized protein.	0.505
A0A368RK15	K3XY48_SETIT	A0A368RK15	K3XY48	Uncharacterized protein.	Homeobox domain-containing protein.	0.501
A0A368RK15	K3YE65_SETIT	A0A368RK15	K3YE65	Uncharacterized protein.	Uncharacterized protein.	0.479
A0A368RK15	K3YJZ2_SETIT	A0A368RK15	K3YJZ2	Uncharacterized protein.	F-box domain-containing protein.	0.443
A0A368RK15	K3Z733_SETIT	A0A368RK15	K3Z733	Uncharacterized protein.	Uncharacterized protein.	0.472
A0A368RK15	K3ZHI4_SETIT	A0A368RK15	K3ZHI4	Uncharacterized protein.	Uncharacterized protein.	0.487
A0A368RK15	K3ZIC3_SETIT	A0A368RK15	K3ZIC3	Uncharacterized protein.	Uncharacterized protein.	0.469
A0A368RK15	K3ZRX3_SETIT	A0A368RK15	K3ZRX3	Uncharacterized protein.	GIY-YIG domain-containing protein.	0.503
A0A368S7W1	A0A368RK15	A0A368S7W1	A0A368RK15	Uncharacterized protein.	Uncharacterized protein.	0.462
A0A368S7W1	A0A368SDZ1	A0A368S7W1	A0A368SDZ1	Uncharacterized protein.	Uncharacterized protein.	0.463
A0A368S7W1	A0A368SN67	A0A368S7W1	A0A368SN67	Uncharacterized protein.	Uncharacterized protein.	0.402
A0A368S7W1	K3XFK9_SETIT	A0A368S7W1	K3XFK9	Uncharacterized protein.	DUF3506 domain-containing protein.	0.483

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