(36 nodes) Processing of Intronless Pre-mRNAs network (Setaria italica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A368Q547	RRM domain-containing protein. (200 aa)
	A0A368QJZ5	WD_REPEATS_REGION domain-containing protein. (337 aa)
	A0A368R4Y1	TPR_REGION domain-containing protein. (755 aa)
	A0A368RRF4	Uncharacterized protein. (1378 aa)
	A0A368RY73	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (603 aa)
	A0A368S4I0	RRM domain-containing protein. (532 aa)
	A0A368S6G3	Cleavage and polyadenylation specificity factor subunit 2. (233 aa)
	A0A368SEQ7	WD_REPEATS_REGION domain-containing protein. (422 aa)
	A0A368SW39	RRM domain-containing protein. (231 aa)
	K3XDV0_SETIT	Uncharacterized protein. (1292 aa)
	K3XF70_SETIT	TPR_REGION domain-containing protein. (687 aa)
	K3XF83_SETIT	Uncharacterized protein. (683 aa)
	K3XVT8_SETIT	Uncharacterized protein. (637 aa)
	K3XWT9_SETIT	TPX2_importin domain-containing protein. (456 aa)
	K3XY93_SETIT	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (324 aa)
	K3Y264_SETIT	RRM domain-containing protein. (201 aa)
	K3Y4R0_SETIT	CPSF_A domain-containing protein. (1248 aa)
	K3YA48_SETIT	Uncharacterized protein. (199 aa)
	K3YAG0_SETIT	CPSF_A domain-containing protein. (162 aa)
	K3YG34_SETIT	CID domain-containing protein. (961 aa)
	K3YPU2_SETIT	Myb-like domain-containing protein. (878 aa)
	K3YSJ3_SETIT	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily. (437 aa)
	K3Z816_SETIT	WD_REPEATS_REGION domain-containing protein. (320 aa)
	K3Z9R0_SETIT	Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing. (202 aa)
	K3ZPH6_SETIT	Cleavage and polyadenylation specificity factor subunit 2. (69 aa)
	K3ZPS0_SETIT	Uncharacterized protein. (39 aa)
	K3ZQ40_SETIT	Uncharacterized protein. (1256 aa)
	K3ZQA3_SETIT	Uncharacterized protein. (1053 aa)
	K3ZR08_SETIT	Uncharacterized protein. (747 aa)
	K3ZR17_SETIT	Cleavage and polyadenylation specificity factor subunit 2. (737 aa)
	K4A318_SETIT	Uncharacterized protein. (450 aa)
	K4A4Y3_SETIT	Fip1 domain-containing protein. (1291 aa)
	K4A6J0_SETIT	Uncharacterized protein. (695 aa)
	K4AI84_SETIT	Fip1 domain-containing protein. (851 aa)
	K4AIP1_SETIT	RRM domain-containing protein. (235 aa)
	K4AIS5_SETIT	WD_REPEATS_REGION domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (715 aa)

Your Current Organism:

Setaria italica

NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A368Q547	A0A368QJZ5	A0A368Q547	A0A368QJZ5	RRM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.772
A0A368Q547	A0A368R4Y1	A0A368Q547	A0A368R4Y1	RRM domain-containing protein.	TPR_REGION domain-containing protein.	0.924
A0A368Q547	A0A368RRF4	A0A368Q547	A0A368RRF4	RRM domain-containing protein.	Uncharacterized protein.	0.823
A0A368Q547	A0A368RY73	A0A368Q547	A0A368RY73	RRM domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.664
A0A368Q547	A0A368S4I0	A0A368Q547	A0A368S4I0	RRM domain-containing protein.	RRM domain-containing protein.	0.540
A0A368Q547	A0A368S6G3	A0A368Q547	A0A368S6G3	RRM domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.926
A0A368Q547	A0A368SEQ7	A0A368Q547	A0A368SEQ7	RRM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.963
A0A368Q547	A0A368SW39	A0A368Q547	A0A368SW39	RRM domain-containing protein.	RRM domain-containing protein.	0.540
A0A368Q547	K3XDV0_SETIT	A0A368Q547	K3XDV0	RRM domain-containing protein.	Uncharacterized protein.	0.960
A0A368Q547	K3XF70_SETIT	A0A368Q547	K3XF70	RRM domain-containing protein.	TPR_REGION domain-containing protein.	0.924
A0A368Q547	K3XF83_SETIT	A0A368Q547	K3XF83	RRM domain-containing protein.	Uncharacterized protein.	0.914
A0A368Q547	K3XVT8_SETIT	A0A368Q547	K3XVT8	RRM domain-containing protein.	Uncharacterized protein.	0.968
A0A368Q547	K3XWT9_SETIT	A0A368Q547	K3XWT9	RRM domain-containing protein.	TPX2_importin domain-containing protein.	0.823
A0A368Q547	K3Y264_SETIT	A0A368Q547	K3Y264	RRM domain-containing protein.	RRM domain-containing protein.	0.572
A0A368Q547	K3Y4R0_SETIT	A0A368Q547	K3Y4R0	RRM domain-containing protein.	CPSF_A domain-containing protein.	0.823
A0A368Q547	K3YA48_SETIT	A0A368Q547	K3YA48	RRM domain-containing protein.	Uncharacterized protein.	0.938
A0A368Q547	K3YAG0_SETIT	A0A368Q547	K3YAG0	RRM domain-containing protein.	CPSF_A domain-containing protein.	0.823
A0A368Q547	K3YG34_SETIT	A0A368Q547	K3YG34	RRM domain-containing protein.	CID domain-containing protein.	0.941
A0A368Q547	K3YPU2_SETIT	A0A368Q547	K3YPU2	RRM domain-containing protein.	Myb-like domain-containing protein.	0.919
A0A368Q547	K3YSJ3_SETIT	A0A368Q547	K3YSJ3	RRM domain-containing protein.	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.	0.946

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