(18 nodes) Carotenoid dioxygenase activity network (Setaria italica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0Q3VVM9	Uncharacterized protein. (231 aa)
	A0A368PQB6	Uncharacterized protein. (650 aa)
	A0A368Q0B7	Uncharacterized protein. (610 aa)
	A0A368QNF3	Uncharacterized protein. (602 aa)
	A0A368RB14	Uncharacterized protein. (553 aa)
	A0A368S6C3	Uncharacterized protein. (602 aa)
	A0A368SIQ7	Uncharacterized protein. (654 aa)
	K3XG48_SETIT	Uncharacterized protein. (560 aa)
	K3XRU8_SETIT	Uncharacterized protein. (577 aa)
	K3XSH0_SETIT	Uncharacterized protein. (587 aa)
	K3Y5W6_SETIT	Uncharacterized protein. (631 aa)
	K3YD77_SETIT	Uncharacterized protein. (88 aa)
	K3Z562_SETIT	Uncharacterized protein. (545 aa)
	K3ZDR2_SETIT	Uncharacterized protein. (594 aa)
	K3ZI44_SETIT	Uncharacterized protein. (508 aa)
	K3ZRN0_SETIT	Uncharacterized protein. (606 aa)
	K3ZRT6_SETIT	Uncharacterized protein. (582 aa)
	K4ALR9_SETIT	Uncharacterized protein. (611 aa)

Your Current Organism:

Setaria italica

NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A368RB14	K3Y5W6_SETIT	A0A368RB14	K3Y5W6	Uncharacterized protein.	Uncharacterized protein.	0.963
A0A368S6C3	K3Y5W6_SETIT	A0A368S6C3	K3Y5W6	Uncharacterized protein.	Uncharacterized protein.	0.946
K3XG48_SETIT	K3Y5W6_SETIT	K3XG48	K3Y5W6	Uncharacterized protein.	Uncharacterized protein.	0.946
K3XRU8_SETIT	K3Y5W6_SETIT	K3XRU8	K3Y5W6	Uncharacterized protein.	Uncharacterized protein.	0.946
K3XSH0_SETIT	K3Y5W6_SETIT	K3XSH0	K3Y5W6	Uncharacterized protein.	Uncharacterized protein.	0.646
K3Y5W6_SETIT	A0A368RB14	K3Y5W6	A0A368RB14	Uncharacterized protein.	Uncharacterized protein.	0.963
K3Y5W6_SETIT	A0A368S6C3	K3Y5W6	A0A368S6C3	Uncharacterized protein.	Uncharacterized protein.	0.946
K3Y5W6_SETIT	K3XG48_SETIT	K3Y5W6	K3XG48	Uncharacterized protein.	Uncharacterized protein.	0.946
K3Y5W6_SETIT	K3XRU8_SETIT	K3Y5W6	K3XRU8	Uncharacterized protein.	Uncharacterized protein.	0.946
K3Y5W6_SETIT	K3XSH0_SETIT	K3Y5W6	K3XSH0	Uncharacterized protein.	Uncharacterized protein.	0.646
K3Y5W6_SETIT	K3ZI44_SETIT	K3Y5W6	K3ZI44	Uncharacterized protein.	Uncharacterized protein.	0.485
K3ZI44_SETIT	K3Y5W6_SETIT	K3ZI44	K3Y5W6	Uncharacterized protein.	Uncharacterized protein.	0.485

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