(8 nodes) U6 snRNA binding network (Setaria italica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A368QR70	Uncharacterized protein. (493 aa)
	A0A368QRF3	MPN domain-containing protein. (2363 aa)
	A0A368R1T2	Uncharacterized protein. (68 aa)
	K3XMX9_SETIT	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
	K3XUQ4_SETIT	MPN domain-containing protein. (2351 aa)
	K3XVQ9_SETIT	Uncharacterized protein. (663 aa)
	K3YG88_SETIT	RRM domain-containing protein. (834 aa)
	K4A8F7_SETIT	WD_REPEATS_REGION domain-containing protein. (524 aa)

Your Current Organism:

Setaria italica

NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A368QR70	A0A368QRF3	A0A368QR70	A0A368QRF3	Uncharacterized protein.	MPN domain-containing protein.	0.921
A0A368QR70	A0A368R1T2	A0A368QR70	A0A368R1T2	Uncharacterized protein.	Uncharacterized protein.	0.419
A0A368QR70	K3XMX9_SETIT	A0A368QR70	K3XMX9	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.419
A0A368QR70	K3XUQ4_SETIT	A0A368QR70	K3XUQ4	Uncharacterized protein.	MPN domain-containing protein.	0.921
A0A368QR70	K3YG88_SETIT	A0A368QR70	K3YG88	Uncharacterized protein.	RRM domain-containing protein.	0.456
A0A368QRF3	A0A368QR70	A0A368QRF3	A0A368QR70	MPN domain-containing protein.	Uncharacterized protein.	0.921
A0A368QRF3	A0A368R1T2	A0A368QRF3	A0A368R1T2	MPN domain-containing protein.	Uncharacterized protein.	0.933
A0A368QRF3	K3XMX9_SETIT	A0A368QRF3	K3XMX9	MPN domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.933
A0A368QRF3	K3XVQ9_SETIT	A0A368QRF3	K3XVQ9	MPN domain-containing protein.	Uncharacterized protein.	0.921
A0A368QRF3	K3YG88_SETIT	A0A368QRF3	K3YG88	MPN domain-containing protein.	RRM domain-containing protein.	0.480
A0A368QRF3	K4A8F7_SETIT	A0A368QRF3	K4A8F7	MPN domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.920
A0A368R1T2	A0A368QR70	A0A368R1T2	A0A368QR70	Uncharacterized protein.	Uncharacterized protein.	0.419
A0A368R1T2	A0A368QRF3	A0A368R1T2	A0A368QRF3	Uncharacterized protein.	MPN domain-containing protein.	0.933
A0A368R1T2	K3XUQ4_SETIT	A0A368R1T2	K3XUQ4	Uncharacterized protein.	MPN domain-containing protein.	0.933
A0A368R1T2	K3XVQ9_SETIT	A0A368R1T2	K3XVQ9	Uncharacterized protein.	Uncharacterized protein.	0.419
A0A368R1T2	K3YG88_SETIT	A0A368R1T2	K3YG88	Uncharacterized protein.	RRM domain-containing protein.	0.952
A0A368R1T2	K4A8F7_SETIT	A0A368R1T2	K4A8F7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.852
K3XMX9_SETIT	A0A368QR70	K3XMX9	A0A368QR70	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.419
K3XMX9_SETIT	A0A368QRF3	K3XMX9	A0A368QRF3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	MPN domain-containing protein.	0.933
K3XMX9_SETIT	K3XUQ4_SETIT	K3XMX9	K3XUQ4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	MPN domain-containing protein.	0.933

page 1 of 3

Server load: low (24%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About