(38 nodes) Phosphorylation of RNA polymerase II C-terminal domain network (Setaria italica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	K3XGP6_SETIT	Protein kinase domain-containing protein. (515 aa)
	A0A0Q3Q1X7	Protein kinase domain-containing protein. (543 aa)
	A0A0Q3REU9	Protein kinase domain-containing protein. (480 aa)
	A0A0Q3V6E3	Uncharacterized protein. (115 aa)
	A0A368PKV2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (404 aa)
	A0A368PML7	Protein kinase domain-containing protein. (705 aa)
	A0A368Q973	Protein kinase domain-containing protein. (550 aa)
	A0A368QJA0	Uncharacterized protein. (70 aa)
	A0A368QYN6	Protein kinase domain-containing protein. (457 aa)
	A0A368R4L0	Protein kinase domain-containing protein. (476 aa)
	A0A368R4L1	Uncharacterized protein. (128 aa)
	A0A368R770	Protein kinase domain-containing protein. (283 aa)
	A0A368RIP7	Uncharacterized protein. (599 aa)
	A0A368S5G9	Protein kinase domain-containing protein. (554 aa)
	K3XG50_SETIT	Protein kinase domain-containing protein. (560 aa)
	K3XG59_SETIT	Protein kinase domain-containing protein. (557 aa)
	K3YC78_SETIT	Protein kinase domain-containing protein. (650 aa)
	K3YDZ3_SETIT	Protein kinase domain-containing protein. (355 aa)
	K3YGD9_SETIT	Protein kinase domain-containing protein. (752 aa)
	K3YGS8_SETIT	Uncharacterized protein. (600 aa)
	K3YHK5_SETIT	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (451 aa)
	K3YIH8_SETIT	BSD domain-containing protein. (334 aa)
	K3YIM0_SETIT	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (324 aa)
	K3YQF7_SETIT	Protein kinase domain-containing protein. (702 aa)
	K3YUM7_SETIT	Uncharacterized protein. (291 aa)
	K3YZI4_SETIT	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (396 aa)
	K3Z490_SETIT	Protein kinase domain-containing protein. (703 aa)
	K3Z5G3_SETIT	Protein kinase domain-containing protein. (515 aa)
	K3Z7W2_SETIT	Protein kinase domain-containing protein. (330 aa)
	K3ZBI0_SETIT	Uncharacterized protein. (70 aa)
	K3ZBR4_SETIT	Uncharacterized protein. (55 aa)
	K3ZD32_SETIT	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (114 aa)
	K3ZFV6_SETIT	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (94 aa)
	K3ZLM0_SETIT	Protein kinase domain-containing protein. (635 aa)
	K3ZR51_SETIT	Protein kinase domain-containing protein. (709 aa)
	K4A1K9_SETIT	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (417 aa)
	K4A809_SETIT	Protein kinase domain-containing protein. (551 aa)
	K4AIY6_SETIT	CYCLIN domain-containing protein; Belongs to the cyclin family. (326 aa)

Your Current Organism:

Setaria italica

NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3Q1X7	K4AIY6_SETIT	A0A0Q3Q1X7	K4AIY6	Protein kinase domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.640
A0A0Q3REU9	K4AIY6_SETIT	A0A0Q3REU9	K4AIY6	Protein kinase domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.640
A0A0Q3V6E3	K4AIY6_SETIT	A0A0Q3V6E3	K4AIY6	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.640
A0A368PML7	K4AIY6_SETIT	A0A368PML7	K4AIY6	Protein kinase domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.640
A0A368Q973	K4AIY6_SETIT	A0A368Q973	K4AIY6	Protein kinase domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.640
A0A368QJA0	A0A368RIP7	A0A368QJA0	A0A368RIP7	Uncharacterized protein.	Uncharacterized protein.	0.940
A0A368QJA0	K3YGS8_SETIT	A0A368QJA0	K3YGS8	Uncharacterized protein.	Uncharacterized protein.	0.940
A0A368QJA0	K3YHK5_SETIT	A0A368QJA0	K3YHK5	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.968
A0A368QJA0	K3YIH8_SETIT	A0A368QJA0	K3YIH8	Uncharacterized protein.	BSD domain-containing protein.	0.917
A0A368QJA0	K3YUM7_SETIT	A0A368QJA0	K3YUM7	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A368QJA0	K3ZBI0_SETIT	A0A368QJA0	K3ZBI0	Uncharacterized protein.	Uncharacterized protein.	0.545
A0A368QJA0	K3ZD32_SETIT	A0A368QJA0	K3ZD32	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.968
A0A368QJA0	K3ZFV6_SETIT	A0A368QJA0	K3ZFV6	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.968
A0A368QJA0	K4AIY6_SETIT	A0A368QJA0	K4AIY6	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.895
A0A368QYN6	K4AIY6_SETIT	A0A368QYN6	K4AIY6	Protein kinase domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.640
A0A368R4L0	K4AIY6_SETIT	A0A368R4L0	K4AIY6	Protein kinase domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.640
A0A368R4L1	K4AIY6_SETIT	A0A368R4L1	K4AIY6	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.640
A0A368RIP7	A0A368QJA0	A0A368RIP7	A0A368QJA0	Uncharacterized protein.	Uncharacterized protein.	0.940
A0A368RIP7	K3YGS8_SETIT	A0A368RIP7	K3YGS8	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A368RIP7	K3YHK5_SETIT	A0A368RIP7	K3YHK5	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.969

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