STRINGSTRING
A0A368PVN1 A0A368PVN1 A0A368Q0U3 A0A368Q0U3 A0A368QU23 A0A368QU23 A0A368RIM6 A0A368RIM6 A0A368SCH2 A0A368SCH2 A0A368SCZ0 A0A368SCZ0 K3XGM8_SETIT K3XGM8_SETIT K3XNH6_SETIT K3XNH6_SETIT K3XNK1_SETIT K3XNK1_SETIT K3XW16_SETIT K3XW16_SETIT K3XXF9_SETIT K3XXF9_SETIT K3XZ09_SETIT K3XZ09_SETIT K3Y0A7_SETIT K3Y0A7_SETIT K3YAY9_SETIT K3YAY9_SETIT K3YB21_SETIT K3YB21_SETIT K3YBK4_SETIT K3YBK4_SETIT K3YKH7_SETIT K3YKH7_SETIT K3YL50_SETIT K3YL50_SETIT K3YR56_SETIT K3YR56_SETIT K3YT29_SETIT K3YT29_SETIT K3YWN5_SETIT K3YWN5_SETIT K3ZAY8_SETIT K3ZAY8_SETIT K3ZB21_SETIT K3ZB21_SETIT K3ZB47_SETIT K3ZB47_SETIT K3ZB54_SETIT K3ZB54_SETIT K3ZF04_SETIT K3ZF04_SETIT K3ZYI2_SETIT K3ZYI2_SETIT K3ZYM4_SETIT K3ZYM4_SETIT K4ADK8_SETIT K4ADK8_SETIT K4AGJ3_SETIT K4AGJ3_SETIT K4AGL8_SETIT K4AGL8_SETIT K4AHG4_SETIT K4AHG4_SETIT
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A368PVN1Uncharacterized protein. (134 aa)
A0A368Q0U3PRP38_assoc domain-containing protein. (385 aa)
A0A368QU23Uncharacterized protein. (858 aa)
A0A368RIM6Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
A0A368SCH2Uncharacterized protein. (304 aa)
A0A368SCZ0RRM domain-containing protein. (130 aa)
K3XGM8_SETITUncharacterized protein. (517 aa)
K3XNH6_SETITSmall nuclear ribonucleoprotein Sm D2. (104 aa)
K3XNK1_SETITU6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
K3XW16_SETITPSP domain-containing protein. (583 aa)
K3XXF9_SETITUncharacterized protein. (392 aa)
K3XZ09_SETITMatrin-type domain-containing protein. (246 aa)
K3Y0A7_SETITUncharacterized protein. (98 aa)
K3YAY9_SETITSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (115 aa)
K3YB21_SETITSmall nuclear ribonucleoprotein Sm D2. (105 aa)
K3YBK4_SETITUncharacterized protein. (56 aa)
K3YKH7_SETITSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
K3YL50_SETITSm domain-containing protein. (61 aa)
K3YR56_SETITPSP domain-containing protein. (580 aa)
K3YT29_SETITUncharacterized protein. (398 aa)
K3YWN5_SETITSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
K3ZAY8_SETITUncharacterized protein. (110 aa)
K3ZB21_SETITSmall nuclear ribonucleoprotein Sm D2. (104 aa)
K3ZB47_SETITU6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
K3ZB54_SETITU6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
K3ZF04_SETITUncharacterized protein. (409 aa)
K3ZYI2_SETITSplicing factor subunit; Belongs to the SF3B5 family. (89 aa)
K3ZYM4_SETITSmall nuclear ribonucleoprotein G. (81 aa)
K4ADK8_SETITUncharacterized protein. (277 aa)
K4AGJ3_SETITSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
K4AGL8_SETITRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
K4AHG4_SETITSmall nuclear ribonucleoprotein G. (80 aa)
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet
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