(34 nodes) Cytoplasmic stress granule network (Setaria italica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	K3Y068_SETIT	Uncharacterized protein. (110 aa)
	A0A368SWK7	Uncharacterized protein. (562 aa)
	A0A368SIL9	Uncharacterized protein; Belongs to the DEAD box helicase family. (480 aa)
	A0A368SEZ2	Uncharacterized protein. (253 aa)
	A0A368SAX7	NifU domain-containing protein. (247 aa)
	A0A368S242	DEAD domain-containing protein. (546 aa)
	A0A368RYQ4	Uncharacterized protein; Belongs to the DEAD box helicase family. (501 aa)
	A0A368RWF1	Uncharacterized protein. (433 aa)
	A0A368RUQ6	Uncharacterized protein. (420 aa)
	A0A368QVN0	Uncharacterized protein. (284 aa)
	A0A368Q7W3	Uncharacterized protein. (444 aa)
	A0A368PZR5	NifU domain-containing protein. (121 aa)
	A0A0Q3V1E0	Uncharacterized protein. (119 aa)
	A0A0Q3UV17	Uncharacterized protein; Belongs to the DEAD box helicase family. (303 aa)
	A0A0Q3RQX1	Q_MOTIF domain-containing protein. (176 aa)
	A0A0Q3QWU8	Uncharacterized protein; Belongs to the DEAD box helicase family. (382 aa)
	K4AL14_SETIT	HTH La-type RNA-binding domain-containing protein. (366 aa)
	K4AJF6_SETIT	Uncharacterized protein. (307 aa)
	K4AD23_SETIT	FLZ-type domain-containing protein. (304 aa)
	K4AAH5_SETIT	Uncharacterized protein. (415 aa)
	K4A9H7_SETIT	HTH La-type RNA-binding domain-containing protein. (467 aa)
	K4A8Y0_SETIT	Uncharacterized protein. (498 aa)
	K4A6X7_SETIT	2-Hacid_dh_C domain-containing protein. (642 aa)
	K4A5F8_SETIT	2-Hacid_dh_C domain-containing protein. (943 aa)
	K4A5C6_SETIT	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (989 aa)
	K3ZRI7_SETIT	Uncharacterized protein. (623 aa)
	K3ZI63_SETIT	DEAD domain-containing protein. (496 aa)
	K3Z505_SETIT	3'-5' exonuclease domain-containing protein. (565 aa)
	K3YRN3_SETIT	Uncharacterized protein; Belongs to the DEAD box helicase family. (517 aa)
	K3YQZ3_SETIT	LsmAD domain-containing protein. (604 aa)
	K3YPE5_SETIT	Uncharacterized protein. (1174 aa)
	K3Y772_SETIT	Uncharacterized protein. (456 aa)
	K3Y771_SETIT	Uncharacterized protein. (456 aa)
	K3XJU3_SETIT	FLZ-type domain-containing protein. (334 aa)

Your Current Organism:

Setaria italica

NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3QWU8	K3YQZ3_SETIT	A0A0Q3QWU8	K3YQZ3	Uncharacterized protein; Belongs to the DEAD box helicase family.	LsmAD domain-containing protein.	0.845
A0A0Q3RQX1	K3YQZ3_SETIT	A0A0Q3RQX1	K3YQZ3	Q_MOTIF domain-containing protein.	LsmAD domain-containing protein.	0.845
A0A0Q3UV17	A0A368RYQ4	A0A0Q3UV17	A0A368RYQ4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.900
A0A0Q3UV17	K3YQZ3_SETIT	A0A0Q3UV17	K3YQZ3	Uncharacterized protein; Belongs to the DEAD box helicase family.	LsmAD domain-containing protein.	0.845
A0A0Q3UV17	K3YRN3_SETIT	A0A0Q3UV17	K3YRN3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.900
A0A0Q3V1E0	K3YQZ3_SETIT	A0A0Q3V1E0	K3YQZ3	Uncharacterized protein.	LsmAD domain-containing protein.	0.845
A0A368Q7W3	K3YQZ3_SETIT	A0A368Q7W3	K3YQZ3	Uncharacterized protein.	LsmAD domain-containing protein.	0.547
A0A368RWF1	K3YQZ3_SETIT	A0A368RWF1	K3YQZ3	Uncharacterized protein.	LsmAD domain-containing protein.	0.547
A0A368RYQ4	A0A0Q3UV17	A0A368RYQ4	A0A0Q3UV17	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.900
A0A368RYQ4	K3YQZ3_SETIT	A0A368RYQ4	K3YQZ3	Uncharacterized protein; Belongs to the DEAD box helicase family.	LsmAD domain-containing protein.	0.845
A0A368RYQ4	K3YRN3_SETIT	A0A368RYQ4	K3YRN3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.900
A0A368SIL9	K3YQZ3_SETIT	A0A368SIL9	K3YQZ3	Uncharacterized protein; Belongs to the DEAD box helicase family.	LsmAD domain-containing protein.	0.845
K3YPE5_SETIT	K4A8Y0_SETIT	K3YPE5	K4A8Y0	Uncharacterized protein.	Uncharacterized protein.	0.458
K3YQZ3_SETIT	A0A0Q3QWU8	K3YQZ3	A0A0Q3QWU8	LsmAD domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.845
K3YQZ3_SETIT	A0A0Q3RQX1	K3YQZ3	A0A0Q3RQX1	LsmAD domain-containing protein.	Q_MOTIF domain-containing protein.	0.845
K3YQZ3_SETIT	A0A0Q3UV17	K3YQZ3	A0A0Q3UV17	LsmAD domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.845
K3YQZ3_SETIT	A0A0Q3V1E0	K3YQZ3	A0A0Q3V1E0	LsmAD domain-containing protein.	Uncharacterized protein.	0.845
K3YQZ3_SETIT	A0A368Q7W3	K3YQZ3	A0A368Q7W3	LsmAD domain-containing protein.	Uncharacterized protein.	0.547
K3YQZ3_SETIT	A0A368RWF1	K3YQZ3	A0A368RWF1	LsmAD domain-containing protein.	Uncharacterized protein.	0.547
K3YQZ3_SETIT	A0A368RYQ4	K3YQZ3	A0A368RYQ4	LsmAD domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.845

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